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[185345_at]

Description ZK1037.11 /REP_DB=WormBase Gene ID /WP=CE19337 /TR=Q9XTQ4 /GB=CAB04861.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 4.5
(-3)
A 		17.8
(-0.6)
A 		6.4
(-2.7)
A 		38.4
(3)
A 		34
B 58.2
(-0.1)
A 		8.5
(-3)
A 		23.3
(-2.1)
A 		111.9
(3)
A 		103
C 21.2
(-2.6)
A 		14.7
(-3)
A 		18.6
(-2.7)
A 		105.3
(3)
M 		91
avr 28
(-1.8) 		13.7
(-3) 		16.1
(-2.8) 		85.2
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 48.9
(3)
A 		5.5
(-3)
A 		38.1
(1.5)
A 		7.1
(-2.8)
A 		11.8
(-2.1)
A 		7.6
(-2.7)
A 		43
B 5.2
(-2.5)
A 		7
(-1.5)
A 		9.1
(-0.3)
A 		5
(-2.7)
A 		14.8
(3)
A 		4.4
(-3)
A 		10
C 29.1
(3)
A 		23.1
(1.5)
A 		17
(-0.1)
A 		5.5
(-3)
A 		27.9
(2.7)
A 		9.9
(-1.9)
A 		24
avr 27.7
(3) 		11.9
(-1.3) 		21.4
(1.3) 		5.9
(-3) 		18.2
(0.4) 		7.3
(-2.6) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 1.6
(-3)
A 		3.9
(0.5)
A 		1.7
(-2.9)
A 		5.6
(3)
A 		4
B 18.6
(1.5)
A 		2.1
(-3)
A 		5.4
(-2.1)
A 		23.9
(3)
A 		22
C 7
(-1.8)
A 		4.2
(-3)
A 		6.5
(-2)
A 		17.7
(3)
M 		14
avr 9.1
(-0.2) 		3.4
(-3) 		4.5
(-2.5) 		15.7
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 9
(3)
A 		2
(-2.8)
A 		8.3
(2.4)
A 		1.8
(-3)
A 		3.6
(-1.5)
A 		1.9
(-2.9)
A 		7
B 1.8
(-2.4)
A 		2.3
(-1.7)
A 		2.2
(-1.9)
A 		1.3
(-3)
A 		6
(3)
A 		1.6
(-2.6)
A 		5
C 10.8
(3)
A 		7
(0.6)
A 		4.3
(-1)
A 		1.1
(-3)
A 		9
(1.9)
A 		3.3
(-1.6)
A 		10
avr 7.2
(3) 		3.8
(-0.5) 		4.9
(0.6) 		1.4
(-3) 		6.2
(2) 		2.3
(-2.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185345_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12611
Sequence Type Exemplar sequence
Representative Public ID ZK1037.11 NCBI
Target Description ZK1037.11 /REP_DB=WormBase Gene ID /WP=CE19337 /TR=Q9XTQ4 /GB=CAB04861.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028992(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028992 NCBI Caenorhabditis elegans T26H8.4 (T26H8.4) mRNA, complete cds. 11/11 None
T26H8.4 ENSEMBL cdna:known chromosome:CEL140:V:15307193:15309431:-1 gene:T26H8.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028603 7/11 Cross Hyb Matching Probes None
GENEFINDER00000028605 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15307192-15311571(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26H8.4
Entrez Gene 3565758 Entrez gene
SwissProt Q86CZ6 EMBL-EBI
WormBase CE33842 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD89759 Hypothetical protein T26H8.4 [Caenorhabditis elegans] ref|NP_001024163.1| T26H8.4 [Caenorhabditis elegans] 0.0
blast CAA21766 Hypothetical protein Y75B12B.7 [Caenorhabditis elegans] ref|NP_506753.2| Serpentine Receptor, class W family member (srw-1) [Caenorhabditis elegans] 1.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024163.1 13 10-30,37-59,74-96,109-131,151-170,177-196,216-238,297-316,320-342,384-403,418-440,492-511,524-546
T26H8.4 13 10-30,37-59,74-96,109-131,151-170,177-196,216-238,297-316,320-342,384-403,418-440,492-511,524-546
Sequence
Target Sequence 
>C. ELEGANS:185345_AT
gggaccgttatttcttgtgtcttagactatttaatggatactttgtctacattgaagtct
ggatttatgctcgttcttggaggagtgcagctcatttttgtgaaatatccacatggttca
tggacgatctcattttcaaaatctacagtaatccttcaaatgtctatttttgtcgcaata
gtctcatcggttgcccatttcatttcatttttgtttgaaaaaactattacgagcatgtca
gagaacagtgattgtattggagtttcaaatatttccagtattgatagatctgaacaattt
atgatttcaaatacagatgaatacggaagagtcaatcagattatttcaattgctcgaact
gcaaagttttttatcgtatgtgcctacattcttttgatagcgtttctggcaagaagttgg
atggttaaggaaactggacgatccgagtcaactccaacacttcttatcctggttttaatt
cttcttcacttcttagtcgatggtccgatgacgctcttcggttacattctacccttcttt
gtgaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGACCGTTATTTCTTGTGTCTTAG 564 483 2047 Antisense
GTCTGGATTTATGCTCGTTCTTGGA 503 471 2103 Antisense
GGTTCATGGACGATCTCATTTTCAA 409 507 2161 Antisense
GTCGCAATAGTCTCATCGGTTGCCC 268 473 2218 Antisense
ACATTCTTTTGATAGCGTTTCTGGC 172 105 2432 Antisense
TGGACGATCCGAGTCAACTCCAACA 8 547 2481 Antisense
TCCAACACTTCTTATCCTGGTTTTA 578 587 2499 Antisense
ATCCTGGTTTTAATTCTTCTTCACT 456 39 2512 Antisense
TCTTCACTTCTTAGTCGATGGTCCG 470 615 2529 Antisense
GTCCGATGACGCTCTTCGGTTACAT 361 473 2549 Antisense
TACATTCTACCCTTCTTTGTGAATT 302 645 2569 Antisense
Sequence Source Affymetrix Proprietary Database