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[185344_at]

Description C08E3.11 /REP_DB=WormBase Gene ID /WP=CE08014 /TR=O17202 /GB=AAB70972.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 1.2
(-3)
A 		1.9
(-2.9)
A 		1
(-3)
A 		50.9
(3)
P 		50
B 7.8
(2.6)
A 		8.2
(3)
A 		2.6
(-3)
A 		4.2
(-1.3)
A 		6
C 1.8
(-2.9)
A 		2.6
(-2.7)
A 		0.9
(-3)
A 		39
(3)
A 		38
avr 3.6
(-2.6) 		4.2
(-2.5) 		1.5
(-3) 		31.4
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.4
(-2.5)
A 		3.4
(2.1)
A 		2
(-1.2)
A 		1.2
(-3)
A 		1.4
(-2.5)
A 		3.8
(3)
A 		3
B 1.9
(-2.6)
A 		3.5
(-2)
A 		11.1
(0.9)
A 		16.5
(3)
A 		3.9
(-1.8)
A 		0.9
(-3)
A 		16
C 1.1
(-2.6)
A 		1.9
(-0.8)
A 		3.6
(3)
A 		2
(-0.6)
A 		0.9
(-3)
A 		0.9
(-3)
A 		3
avr 1.5
(-3) 		2.9
(-1.4) 		5.6
(1.8) 		6.6
(3) 		2.1
(-2.3) 		1.9
(-2.5) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.5
(-2.8)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		7.5
(3)
P 		7
B 2.5
(3)
A 		2
(1.4)
A 		0.6
(-3)
A 		0.9
(-2.1)
A 		2
C 0.6
(-2.7)
A 		0.8
(-2.5)
A 		0.3
(-3)
A 		6.6
(3)
A 		6
avr 1.2
(-2) 		1.1
(-2.1) 		0.4
(-3) 		5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.3
(-3)
A 		1.2
(3)
A 		0.4
(-2.3)
A 		0.3
(-3)
A 		0.4
(-2.3)
A 		0.9
(1)
A 		1
B 0.6
(-2.6)
A 		1.2
(-1.7)
A 		2.7
(0.5)
A 		4.4
(3)
A 		1.6
(-1.1)
A 		0.3
(-3)
A 		4
C 0.4
(-2)
A 		0.6
(-0)
A 		0.9
(3)
A 		0.4
(-2)
A 		0.3
(-3)
A 		0.3
(-3)
A 		1
avr 0.4
(-3) 		1
(-0.2) 		1.3
(1.2) 		1.7
(3) 		0.8
(-1.2) 		0.5
(-2.5) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185344_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4051
Sequence Type Exemplar sequence
Representative Public ID C08E3.11 NCBI
Target Description C08E3.11 /REP_DB=WormBase Gene ID /WP=CE08014 /TR=O17202 /GB=AAB70972.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061615(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061615 NCBI Caenorhabditis elegans C08E3.11 (C08E3.11) mRNA, complete cds. 11/11 None
C08E3.11 ENSEMBL cdna:known chromosome:CEL140:II:1621646:1622851:-1 gene:C08E3.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1621644-1622850(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08E3.11
Entrez Gene 182403 Entrez gene
SwissProt O17202 EMBL-EBI
WormBase CE08014 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70972 Hypothetical protein C08E3.11 [Caenorhabditis elegans] ref|NP_494016.1| C08E3.11 [Caenorhabditis elegans] 8.0E-88
blast AAB70967 Hypothetical protein C08E3.8 [Caenorhabditis elegans] ref|NP_494013.1| C08E3.8 [Caenorhabditis elegans] 1.0E-32
blast CAB03304 Hypothetical protein T06C12.4 [Caenorhabditis elegans] ref|NP_506963.1| T06C12.4 [Caenorhabditis elegans] 6.0E-24
Sequence
Target Sequence 
>C. ELEGANS:185344_AT
caggagtcctacgaaaatttctgtagaaatgttggaaatgacgtcatgtcatataatgac
ttcgatttctggttctatcgatttcacaacggaaaccatgacttgcactacgatagaaga
gtcagagctcgttctgagagttttgcaatcaaaattatggtggaatggaaaaaagaatgc
tacgaacctttgcttggttgttgcgtttgttggattattttctaccttccactgaatact
cactgtctatttttttgtatttttaatttgaattctccaaaacacccattgatcgataaa
gtagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGAGTCCTACGAAAATTTCTGTA 34 209 91 Antisense
GATAGAAGAGTCAGAGCTCGTTCTG 143 423 202 Antisense
GAGCTCGTTCTGAGAGTTTTGCAAT 589 385 215 Antisense
AAGAATGCTACGAACCTTTGCTTGG 302 151 263 Antisense
GAACCTTTGCTTGGTTGTTGCGTTT 144 347 274 Antisense
GGTTGTTGCGTTTGTTGGATTATTT 139 507 286 Antisense
GTTGGATTATTTTCTACCTTCCACT 42 437 299 Antisense
TACCTTCCACTGAATACTCACTGTC 139 649 313 Antisense
GAATACTCACTGTCTATTTTTTTGT 663 325 324 Antisense
TTGAATTCTCCAAAACACCCATTGA 182 705 358 Antisense
ACACCCATTGATCGATAAAGTAGTT 8 109 372 Antisense
Sequence Source Affymetrix Proprietary Database