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[185342_at]

Description C24H12.8 /REP_DB=WormBase Gene ID /WP=CE08362 /TR=O17160 /GB=AAB71204.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 3
(-3)
A 		22.7
(3)
A 		18.7
(1.8)
A 		14.2
(0.4)
A 		20
B 2.7
(-2.7)
A 		2.9
(-2.6)
A 		1.6
(-3)
A 		21.5
(3)
A 		20
C 7.8
(-2.6)
A 		18.3
(-1.9)
A 		2.9
(-3)
A 		86
(3)
P 		83
avr 4.5
(-3) 		14.6
(-1.3) 		7.7
(-2.5) 		40.6
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 5.6
(-2.2)
A 		19.9
(3)
A 		11.6
(0)
A 		12.7
(0.4)
A 		3.3
(-3)
A 		5.1
(-2.3)
A 		17
B 3
(-3)
A 		16.4
(3)
A 		4
(-2.6)
A 		4.5
(-2.3)
A 		9
(-0.3)
A 		13.3
(1.6)
A 		13
C 2.9
(-3)
A 		3
(-3)
A 		6.8
(-2.3)
A 		38
(3)
P 		4.9
(-2.7)
A 		8.7
(-2)
A 		35
avr 3.8
(-3) 		13.1
(0.8) 		7.5
(-1.5) 		18.4
(3) 		5.7
(-2.2) 		9
(-0.9) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.1
(-3)
A 		4.9
(3)
A 		4.9
(3)
A 		2.1
(-1.4)
A 		4
B 0.9
(-2.3)
A 		0.7
(-2.6)
A 		0.4
(-3)
A 		4.6
(3)
A 		4
C 2.6
(-2.3)
A 		5.3
(-1.1)
A 		1
(-3)
A 		14.5
(3)
P 		14
avr 1.5
(-3) 		3.6
(-0.8) 		2.1
(-2.4) 		7.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1
(-3)
A 		7.1
(3)
A 		2.5
(-1.5)
A 		3.2
(-0.8)
A 		1
(-3)
A 		1.2
(-2.8)
A 		6
B 1
(-3)
A 		5.5
(3)
A 		1
(-3)
A 		1.2
(-2.7)
A 		3.6
(0.5)
A 		5
(2.3)
A 		5
C 1.1
(-2.8)
A 		0.9
(-3)
A 		1.7
(-2.3)
A 		7.6
(3)
P 		1.6
(-2.4)
A 		2.9
(-1.2)
A 		7
avr 1
(-3) 		4.5
(3) 		1.7
(-1.8) 		4
(2.1) 		2.1
(-1.1) 		3
(0.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185342_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4116
Sequence Type Exemplar sequence
Representative Public ID C24H12.8 NCBI
Target Description C24H12.8 /REP_DB=WormBase Gene ID /WP=CE08362 /TR=O17160 /GB=AAB71204.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061330(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061330 NCBI Caenorhabditis elegans C24H12.8 (C24H12.8) mRNA, complete cds. 11/11 None
C24H12.8 ENSEMBL cdna:known chromosome:CEL140:II:422318:423141:-1 gene:C24H12.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000023837 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:422317-423141(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24H12.8
Entrez Gene 182870 Entrez gene
SwissProt O17160 EMBL-EBI
WormBase CE08362 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71204 Hypothetical protein C24H12.8 [Caenorhabditis elegans] ref|NP_493731.1| C24H12.8 [Caenorhabditis elegans] 1.0E-106
blast NP_493754 T27A1.3 [Caenorhabditis elegans] gb|AAB71044.1| Hypothetical protein T27A1.3 [Caenorhabditis elegans] 7.0E-67
blast AAB71207 Hypothetical protein C24H12.11 [Caenorhabditis elegans] ref|NP_493734.1| C24H12.11 [Caenorhabditis elegans] 2.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493731.1 1 5-27
C24H12.8 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:185342_AT
gagtgggcaactcactttgacgtaaacttttatataaacttcttttgcacgcactacaat
aaaatgaacgttttgccatgtacgtcatacaaaacttcacaagagttaatcagttacttg
aatattttgaacgactcattttcaatcgatcatgtcgatttggcaattgaccgtgatgag
atctatggggagtttcagtccgcgttgagttttgaaatatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGGGCAACTCACTTTGACGTAA 115 375 379 Antisense
GCAACTCACTTTGACGTAAACTTTT 117 317 385 Antisense
TATAAACTTCTTTTGCACGCACTAC 266 659 411 Antisense
ACTTCTTTTGCACGCACTACAATAA 106 103 416 Antisense
GAACGTTTTGCCATGTACGTCATAC 66 349 444 Antisense
CATGTACGTCATACAAAACTTCACA 435 209 455 Antisense
TGAATATTTTGAACGACTCATTTTC 202 575 497 Antisense
GCAATTGACCGTGATGAGATCTATG 353 323 541 Antisense
GATCTATGGGGAGTTTCAGTCCGCG 662 417 558 Antisense
AGTTTCAGTCCGCGTTGAGTTTTGA 320 1 569 Antisense
GTCCGCGTTGAGTTTTGAAATATGG 662 475 576 Antisense
Sequence Source Affymetrix Proprietary Database