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[185340_at]

Description C40A11.4 /REP_DB=WormBase Gene ID /WP=CE19367 /TR=Q9TZB0 /GB=AAC68758.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 20      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 65
(1)
P 		69.4
(1.3)
A 		7.3
(-3)
A 		94.2
(3)
P 		87
B 27.4
(-3)
A 		59.5
(3)
P 		45
(0.3)
A 		56.9
(2.5)
A 		32
C 55.5
(0.1)
A 		32.9
(-3)
P 		33.2
(-3)
A 		77.1
(3)
A 		44
avr 49.3
(-0.4) 		53.9
(0.2) 		28.5
(-3) 		76.1
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 88.4
(0.6)
P 		13.3
(-2.7)
A 		31.2
(-1.9)
A 		32.8
(-1.9)
A 		7.2
(-3)
A 		142.9
(3)
P 		136
B 81.8
(0.3)
P 		36.8
(-2.2)
A 		21.9
(-3)
A 		54.9
(-1.2)
A 		49
(-1.5)
A 		130.3
(3)
M 		108
C 53.2
(-1.4)
P 		46.9
(-1.7)
A 		24.5
(-2.9)
A 		63.1
(-0.9)
A 		22.9
(-3)
A 		135.8
(3)
P 		113
avr 74.5
(-0.4) 		32.3
(-2.7) 		25.9
(-3) 		50.3
(-1.7) 		26.4
(-3) 		136.3
(3) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 23.7
(3)
P 		15.1
(0.6)
A 		1.9
(-3)
A 		13.8
(0.3)
P 		22
B 8.7
(-3)
A 		14.7
(3)
P 		10.4
(-1.3)
A 		12.1
(0.4)
A 		6
C 18.4
(3)
A 		9.5
(-3)
P 		11.6
(-1.6)
A 		13
(-0.6)
A 		9
avr 16.9
(3) 		13.1
(0.4) 		8
(-3) 		13
(0.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 16.3
(-0.4)
P 		4.7
(-2.5)
A 		6.8
(-2.2)
A 		8.3
(-1.9)
A 		2.2
(-3)
A 		34.8
(3)
P 		33
B 28.5
(0.2)
P 		12.2
(-2)
A 		5.3
(-3)
A 		14.5
(-1.7)
A 		19.9
(-1)
A 		48.6
(3)
M 		43
C 19.7
(-0.9)
P 		14.3
(-1.8)
A 		6.2
(-3)
A 		12.7
(-2)
A 		7.4
(-2.8)
A 		45.5
(3)
P 		39
avr 21.5
(-0.5) 		10.4
(-2.3) 		6.1
(-3) 		11.8
(-2.1) 		9.8
(-2.4) 		43
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185340_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4984
Sequence Type Exemplar sequence
Representative Public ID C40A11.4 NCBI
Target Description C40A11.4 /REP_DB=WormBase Gene ID /WP=CE19367 /TR=Q9TZB0 /GB=AAC68758.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061794(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061794 NCBI Caenorhabditis elegans C40A11.4 (C40A11.4) mRNA, complete cds. 10/11 None
GENEFINDER00000005090 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2137326:2138923:1 11/11 None
C40A11.4 ENSEMBL cdna:known chromosome:CEL140:II:2137326:2138952:1 gene:C40A11.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005075 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2137324-2138951(+) 97.74 100.0
Public Domain and Genome References
Gene Title
Ensembl C40A11.4
Entrez Gene 173571 Entrez gene
SwissProt Q9TZB0 EMBL-EBI
WormBase CE36797 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68758 Hypothetical protein C40A11.4 [Caenorhabditis elegans] ref|NP_494195.2| C40A11.4 [Caenorhabditis elegans] 1.0E-159
blast AAC68758 Hypothetical protein C40A11.4 [Caenorhabditis elegans] ref|NP_494195.2| C40A11.4 [Caenorhabditis elegans] 2.0E-77
blast AAC68760 Hypothetical protein C40A11.2 [Caenorhabditis elegans] ref|NP_494198.3| C40A11.2 [Caenorhabditis elegans] 4.0E-30
blast AAC68762 Hypothetical protein C40A11.7 [Caenorhabditis elegans] ref|NP_494199.1| C40A11.7 [Caenorhabditis elegans] 5.0E-27
blast AAB66084 Hypothetical protein B0281.5 [Caenorhabditis elegans] ref|NP_494230.1| B0281.5 [Caenorhabditis elegans] 4.0E-16
blast AAK72056 Hypothetical protein C17F4.8 [Caenorhabditis elegans] ref|NP_494485.2| C17F4.8 [Caenorhabditis elegans] 9.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 6.7E-8
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 3.3E-19
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 9.0E-29
Sequence
Target Sequence 
>C. ELEGANS:185340_AT
aatggagtagcgccaactgcaacgaccgaattatcgttcccacatcgttcaccgaaacac
tttgacctgatcctgaactacatgagagatggagacgtgcttctgccgagaaacaacaag
gagttggcagaagtcagagaagaagctgaattctatcagctgaatgagttggctagacag
tgtgactctatttggattgttcaatataacaagggaccccgggaaatgctacgcagaatt
gcgggcagtaaaaaggatattcttgtagtttggtattcaacacacaaagatgagcttata
aattgtccggaagacttttcgtttccatatttctatgaacaatacagcgataaaattgat
gtctatttccaaaaagtggagacttctaaccgcattgaaaatgttccgtgcgacagctgc
tggtgcccgggtcgcaaatgcgacgacaaatgccacaatgtcgaagctccgtcttggcga
ttttggctgtactccgcaaacagaggctttcacacttttgacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGAGTAGCGCCAACTGCAACGA 110 163 307 Antisense
ACGACCGAATTATCGTTCCCACATC 73 91 328 Antisense
TCCCACATCGTTCACCGAAACACTT 250 597 344 Antisense
CTTTGACCTGATCCTGAACTACATG 200 223 366 Antisense
AGACGTGCTTCTGCCGAGAAACAAC 409 71 399 Antisense
GACCCCGGGAAATGCTACGCAGAAT 562 377 521 Antisense
AGTGGAGACTTCTAACCGCATTGAA 646 57 681 Antisense
TGAAAATGTTCCGTGCGACAGCTGC 423 573 702 Antisense
AATGCCACAATGTCGAAGCTCCGTC 171 167 755 Antisense
GTCTTGGCGATTTTGGCTGTACTCC 27 469 777 Antisense
ACAGAGGCTTTCACACTTTTGACGA 548 105 806 Antisense
Sequence Source Affymetrix Proprietary Database