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[185338_at]

Description F45C12.5 /REP_DB=WormBase Gene ID /WP=CE10444 /TR=O16745 /GB=AAB66215.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 15      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 5.7
(-2.7)
A 		10.2
(-1.9)
A 		3.8
(-3)
A 		39.1
(3)
A 		35
B 32.5
(3)
A 		4.1
(-3)
A 		16.4
(-0.4)
A 		10.9
(-1.6)
A 		28
C 19.7
(3)
A 		7.3
(-3)
A 		14.3
(0.4)
A 		9.9
(-1.7)
A 		12
avr 19.3
(2.7) 		7.2
(-3) 		11.5
(-1) 		20
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 5.4
(-2.7)
A 		3.6
(-3)
A 		3.6
(-3)
A 		6.7
(-2.5)
A 		41.7
(3)
A 		26.4
(0.6)
A 		38
B 23.8
(0.7)
A 		9.8
(-2.3)
A 		6.8
(-3)
A 		8.2
(-2.7)
A 		8.2
(-2.7)
A 		34.1
(3)
A 		27
C 6.6
(-2.7)
A 		10.2
(-2.2)
A 		6.7
(-2.7)
A 		31.3
(0.8)
A 		4.4
(-3)
A 		47.2
(3)
A 		43
avr 11.9
(-1.8) 		7.9
(-2.6) 		5.7
(-3) 		15.4
(-1.1) 		18.1
(-0.5) 		35.9
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.1
(-1.6)
A 		2.2
(-1.5)
A 		1
(-3)
A 		5.7
(3)
A 		5
B 10.4
(3)
A 		1
(-3)
A 		3.8
(-1.2)
A 		2.3
(-2.2)
A 		9
C 6.5
(3)
A 		2.1
(-2.5)
A 		5
(1.1)
A 		1.7
(-3)
A 		5
avr 6.3
(3) 		1.8
(-3) 		3.3
(-1) 		3.2
(-1.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1
(-2.9)
A 		1.3
(-2.7)
A 		0.8
(-3)
A 		1.7
(-2.5)
A 		12.6
(3)
A 		6.4
(-0.2)
A 		12
B 8.3
(0.6)
A 		3.3
(-2.1)
A 		1.7
(-3)
A 		2.2
(-2.7)
A 		3.4
(-2.1)
A 		12.7
(3)
A 		11
C 2.5
(-2.5)
A 		3.1
(-2.3)
A 		1.7
(-2.9)
A 		6.3
(-1)
A 		1.4
(-3)
A 		15.8
(3)
A 		14
avr 3.9
(-1.5) 		2.6
(-2.3) 		1.4
(-3) 		3.4
(-1.8) 		5.8
(-0.4) 		11.6
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185338_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4983
Sequence Type Exemplar sequence
Representative Public ID F45C12.5 NCBI
Target Description F45C12.5 /REP_DB=WormBase Gene ID /WP=CE10444 /TR=O16745 /GB=AAB66215.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061657(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061657 NCBI Caenorhabditis elegans F45C12.5 (F45C12.5) mRNA, complete cds. 11/11 None
F45C12.5 ENSEMBL cdna:known chromosome:CEL140:II:1724663:1726880:1 gene:F45C12.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033193 8/11 Cross Hyb Matching Probes None
GENEFINDER00000033210 1/11 Cross Hyb Matching Probes None
GENEFINDER00000033211 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1724661-1726879(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45C12.5
Entrez Gene 185769 Entrez gene
SwissProt O16745 EMBL-EBI
WormBase CE10444 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66215 Hypothetical protein F45C12.5 [Caenorhabditis elegans] ref|NP_494058.1| F45C12.5 [Caenorhabditis elegans] 0.0
blast AAC26314 Hypothetical protein T08E11.6 [Caenorhabditis elegans] ref|NP_494083.1| T08E11.6 [Caenorhabditis elegans] 1.0E-122
blast AAK31403 Hypothetical protein C08F1.3 [Caenorhabditis elegans] ref|NP_494079.1| C08F1.3 [Caenorhabditis elegans] 8.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.1E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494058.1 4 404-423,444-463,467-484,509-531
F45C12.5 4 404-423,444-463,467-484,509-531
Sequence
Target Sequence 
>C. ELEGANS:185338_AT
attctcattcagacagttttccctctcccccacccgccattatcctacttctgccacgaa
actcccaatgaagcttttgatgagatcgtcggaaactctggtgtcactggtgtgctgcgc
aattatggatggttgattgttttcgcgtgtgtcttaggaattttactgcatctaagattt
tacaaaagaaagcagtactcaattgagagcttttgctcaaagcggtatctgatggcagca
gggatgcttttcattaacgtcttattcaccggaaatagcattttcagcttgtatggcagt
tgggcaaatgatatcatccagcctgtaatcatatctatcacatggtttatggtgtacaaa
agtttcgacattgccaacgaaacagaatccccaattcactacagattgtcaaagactaca
acggtcaccaaatcacagataatattcatgctcttcttcctcgccaccttcggagcattc
aacatttgctctagcttcattgaactgcgtcaattcccagatgagtacaccggattggca
tttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTCATTCAGACAGTTTTCCCTC 339 11 1099 Antisense
TTCTGCCACGAAACTCCCAATGAAG 529 693 1147 Antisense
GATCGTCGGAAACTCTGGTGTCACT 412 417 1182 Antisense
GTCACTGGTGTGCTGCGCAATTATG 529 465 1201 Antisense
TGATTGTTTTCGCGTGTGTCTTAGG 489 563 1232 Antisense
GATGCTTTTCATTAACGTCTTATTC 538 411 1341 Antisense
GATATCATCCAGCCTGTAATCATAT 115 427 1408 Antisense
GAAACAGAATCCCCAATTCACTACA 28 357 1477 Antisense
CAGATAATATTCATGCTCTTCTTCC 192 207 1534 Antisense
GCATTCAACATTTGCTCTAGCTTCA 683 307 1573 Antisense
TGAGTACACCGGATTGGCATTTTTC 487 551 1620 Antisense
Sequence Source Affymetrix Proprietary Database