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[185337_at]

Description C32B5.12 /REP_DB=WormBase Gene ID /WP=CE27811 /TR=P91106 /GB=AAB37967.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 23      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 72.4
(1)
P 		12.5
(-3)
A 		33.9
(-1.6)
A 		103.1
(3)
P 		91
B 39.5
(-0.4)
P 		43.9
(1)
A 		50.3
(3)
A 		31.5
(-3)
A 		19
C 88.3
(3)
P 		28.5
(-3)
P 		29.9
(-2.9)
A 		29.3
(-2.9)
A 		60
avr 66.7
(3) 		28.3
(-3) 		38
(-1.5) 		54.6
(1.1) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 37.4
(0.1)
A 		55.9
(3)
P 		55.1
(2.9)
M 		17.9
(-3)
A 		48.3
(1.8)
A 		51.9
(2.4)
A 		38
B 74.9
(3)
P 		65.3
(1.6)
P 		46.7
(-1)
A 		32.3
(-3)
A 		32.5
(-3)
A 		48.5
(-0.7)
A 		43
C 55.9
(1.5)
P 		68.5
(3)
P 		18.4
(-3)
A 		58.7
(1.8)
A 		29.7
(-1.6)
A 		68.1
(3)
A 		50
avr 56.1
(1.4) 		63.2
(3) 		40.1
(-2.2) 		36.3
(-3) 		36.8
(-2.9) 		56.2
(1.4) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 26.4
(3)
P 		2.7
(-3)
A 		8.9
(-1.4)
A 		15.1
(0.1)
P 		24
B 12.6
(3)
P 		10.8
(1.2)
A 		11.7
(2.1)
A 		6.7
(-3)
A 		6
C 29.2
(3)
P 		8.2
(-2.2)
P 		10.4
(-1.6)
A 		4.9
(-3)
A 		24
avr 22.7
(3) 		7.2
(-3) 		10.3
(-1.8) 		8.9
(-2.3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 6.9
(-2.1)
A 		19.9
(3)
P 		12
(-0.1)
M 		4.5
(-3)
A 		14.6
(0.9)
A 		12.6
(0.2)
A 		15
B 26.1
(3)
P 		21.7
(1.5)
P 		11.3
(-2.1)
A 		8.6
(-3)
A 		13.2
(-1.4)
A 		18.1
(0.3)
A 		18
C 20.7
(2.3)
P 		20.9
(2.4)
P 		4.7
(-3)
A 		11.8
(-0.6)
A 		9.6
(-1.4)
A 		22.8
(3)
A 		18
avr 17.9
(1.6) 		20.8
(3) 		9.3
(-2.5) 		8.3
(-3) 		12.5
(-1) 		17.8
(1.6) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185337_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4184
Sequence Type Exemplar sequence
Representative Public ID C32B5.12 NCBI
Target Description C32B5.12 /REP_DB=WormBase Gene ID /WP=CE27811 /TR=P91106 /GB=AAB37967.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061461
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000042192 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:950956:952841:-1 10/11 None
C32B5.12 ENSEMBL cdna:known chromosome:CEL140:II:950869:952849:-1 gene:C32B5.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042170 1/11 Cross Hyb Matching Probes None
SNAP00000042171 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:950954-954117(-) 100.0 100.0
Public Domain and Genome References
Ensembl C32B5.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493862 C32B5.12 [Caenorhabditis elegans] gb|AAB37967.3| Hypothetical protein C32B5.12 [Caenorhabditis elegans] 5.0E-30
blast AAB66237 Hypothetical protein R07C3.7 [Caenorhabditis elegans] ref|NP_493850.1| R07C3.7 [Caenorhabditis elegans] 4.0E-25
blast AAC67488 Hypothetical protein F58E1.11 [Caenorhabditis elegans] ref|NP_494044.2| F58E1.11 [Caenorhabditis elegans] 9.0E-18
blast NP_493860 C32B5.10 [Caenorhabditis elegans] gb|AAB37966.1| Hypothetical protein C32B5.10 [Caenorhabditis elegans] 3.0E-17
Sequence
Target Sequence 
>C. ELEGANS:185337_AT
aattggctcaaatcccggagtgctccgcttgccaaacaatatgacgattttcactcggaa
tctagaactctttgatgaagaccacgagtatctactaaaaagtattcgtccactaatgaa
cctgaaaagcttgccattggcatcgctggaactccacggtccacttccacttgaaagtga
cgtcatagaaacttccaagaagcttcttctcagtgagattcttgatgtgaattttgacgt
tgaattccaagaaataaagaaattcaagaatcaagaagtagtgctgaaatttgatgaggc
aagagctcacttttatgagtcttttgaagtacctgctggaagttgggaagcccctgggca
agcaaccgagtttccgatcacctttaatatcccgatgaagtactcctcatcgaaaaatga
agtcagtattcactgcgaactggatccgaatctccgatttcattgggtattttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGGCTCAAATCCCGGAGTGCTC 79 179 762 Antisense
TGCTCCGCTTGCCAAACAATATGAC 39 583 782 Antisense
GTATTCGTCCACTAATGAACCTGAA 207 453 863 Antisense
GCTTGCCATTGGCATCGCTGGAACT 437 305 890 Antisense
CACGGTCCACTTCCACTTGAAAGTG 685 197 916 Antisense
GAGTCTTTTGAAGTACCTGCTGGAA 187 399 1078 Antisense
GCTGGAAGTTGGGAAGCCCCTGGGC 227 295 1096 Antisense
GTTTCCGATCACCTTTAATATCCCG 260 451 1131 Antisense
AATATCCCGATGAAGTACTCCTCAT 580 173 1147 Antisense
GAACTGGATCCGAATCTCCGATTTC 189 349 1198 Antisense
TCTCCGATTTCATTGGGTATTTTCC 171 609 1212 Antisense
Sequence Source Affymetrix Proprietary Database