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[185335_at]

Description F10D2.10 /REP_DB=WormBase Gene ID /WP=CE09321 /TR=O16919 /GB=AAC48240.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 47      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 50.8
(3)
M 		14.7
(-2.3)
A 		28.5
(-0.2)
A 		9.6
(-3)
A 		41
B 107.1
(3)
A 		57
(-2)
A 		56.2
(-2.1)
A 		47
(-3)
A 		60
C 73.6
(3)
A 		58.9
(0.6)
A 		36.3
(-3)
A 		62.9
(1.3)
A 		37
avr 77.2
(3) 		43.5
(-2.4) 		40.3
(-2.9) 		39.8
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 96.3
(0.9)
A 		103.5
(1.3)
P 		127.9
(3)
P 		72.3
(-0.8)
A 		39.6
(-3)
A 		40.1
(-3)
A 		88
B 133.9
(1.1)
P 		129.9
(0.8)
P 		166.8
(3)
P 		84.1
(-1.9)
M 		64.6
(-3)
A 		66.8
(-2.9)
P 		102
C 152.8
(3)
A 		123.9
(1.7)
P 		151.5
(2.9)
A 		91
(0.3)
A 		17.3
(-3)
A 		64.3
(-0.9)
P 		136
avr 127.7
(1.8) 		119.1
(1.4) 		148.7
(3) 		82.5
(-0.7) 		40.5
(-3) 		57.1
(-2.1) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 18.5
(3)
M 		3.2
(-2.4)
A 		7.5
(-0.9)
A 		1.4
(-3)
A 		17
B 34.2
(3)
A 		14.1
(-2)
A 		13
(-2.3)
A 		10
(-3)
A 		24
C 24.4
(3)
A 		16.9
(-0.3)
A 		12.7
(-2.1)
A 		10.6
(-3)
A 		14
avr 25.7
(3) 		11.4
(-1.7) 		11.1
(-1.8) 		7.3
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 17.8
(-1.2)
A 		36.8
(3)
P 		27.9
(1)
P 		18.3
(-1.1)
A 		12
(-2.5)
A 		9.8
(-3)
A 		27
B 46.6
(3)
P 		43.2
(2.2)
P 		40.5
(1.5)
P 		22.3
(-3)
M 		26.3
(-2)
A 		24.9
(-2.4)
P 		24
C 56.6
(3)
A 		37.8
(0.8)
P 		38.6
(0.9)
A 		18.3
(-1.5)
A 		5.6
(-3)
A 		21.5
(-1.1)
P 		51
avr 40.3
(3) 		39.3
(2.8) 		35.7
(1.9) 		19.6
(-1.8) 		14.6
(-3) 		18.7
(-2) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185335_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12164
Sequence Type Exemplar sequence
Representative Public ID F10D2.10 NCBI
Target Description F10D2.10 /REP_DB=WormBase Gene ID /WP=CE09321 /TR=O16919 /GB=AAC48240.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072414(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072414 NCBI Caenorhabditis elegans F10D2.10 (F10D2.10) mRNA, complete cds. 11/11 A 
SNAP00000033811 ENSEMBL cdna:SNAP chromosome:CEL140:V:7157156:7158768:-1 11/11 None
GENEFINDER00000033820 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7157156:7158690:-1 11/11 None
F10D2.10 ENSEMBL cdna:known chromosome:CEL140:V:7157142:7158768:-1 gene:F10D2.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7157076-7158769(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10D2.10
Entrez Gene 179101 Entrez gene
SwissProt O16919 EMBL-EBI
WormBase CE32860 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504815 F10D2.10 [Caenorhabditis elegans] gb|AAC48240.2| Hypothetical protein F10D2.10 [Caenorhabditis elegans] 0.0
blast NP_504815 F10D2.10 [Caenorhabditis elegans] gb|AAC48240.2| Hypothetical protein F10D2.10 [Caenorhabditis elegans] 1.0E-171
blast CAE57813 Hypothetical protein CBG00837 [Caenorhabditis briggsae] 1.0E-129
blast AAF36046 Hypothetical protein Y73C8B.3 [Caenorhabditis elegans] ref|NP_503878.1| Y73C8B.3 [Caenorhabditis elegans] 5.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.0E-126
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185335_AT
atgcgagaatgctcttatgacggcaacaacctttccggctcatggacttgtaatgatgaa
tccattaggattgaggaagcataaatcgattcgtccgttgtcaagacttgagcgcatcga
atgggtttatgatatgctgccaaagtttctggccgacgcgatgatctatagaatgtacct
ctcctttggtctgaaagttcaagacggagaggaggcgatcagcgcattgcgttcagttat
tcgttgtggccttgagacgactctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGAGAATGCTCTTATGACGGCA 370 39 438 Antisense
TATGACGGCAACAACCTTTCCGGCT 106 657 453 Antisense
CCTTTCCGGCTCATGGACTTGTAAT 56 269 467 Antisense
TAAATCGATTCGTCCGTTGTCAAGA 200 639 519 Antisense
GTCAAGACTTGAGCGCATCGAATGG 385 463 537 Antisense
TGCTGCCAAAGTTTCTGGCCGACGC 17 583 572 Antisense
TTTCTGGCCGACGCGATGATCTATA 157 671 583 Antisense
ATAGAATGTACCTCTCCTTTGGTCT 199 23 605 Antisense
GAGGCGATCAGCGCATTGCGTTCAG 131 407 649 Antisense
TGCGTTCAGTTATTCGTTGTGGCCT 696 579 665 Antisense
TCGTTGTGGCCTTGAGACGACTCTG 5 603 678 Antisense
Sequence Source Affymetrix Proprietary Database