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[185334_s_at]

Description R02F11.1 /REP_DB=WormBase Gene ID /WP=CE12496 /TR=O16364 /GB=AAB65897.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 33      6grp_highest_nonorm > 33      6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6020
1 2 3 4 range
A 139.7
(-3)
A 		6056.6
(3)
P 		4791.1
(1.7)
P 		262.2
(-2.9)
A 		5917
B 97.7
(-3)
A 		4822.4
(2.6)
P 		5119
(3)
P 		235.9
(-2.8)
A 		5021
C 110.8
(-2.9)
A 		4908.6
(3)
P 		4288.3
(2.2)
P 		36.9
(-3)
A 		4872
avr 116.1
(-3) 		5262.5
(3) 		4732.8
(2.4) 		178.3
(-2.9) 		5146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1779
1 2 3 4 5 6 range
A 1251.1
(-3)
P 		2842.5
(3)
P 		1360
(-2.6)
P 		1754.5
(-1.1)
P 		1854.3
(-0.7)
P 		1395.2
(-2.5)
P 		1591
B 1088.2
(-3)
P 		2668.2
(3)
P 		1441.9
(-1.7)
P 		1838.5
(-0.2)
P 		1707.9
(-0.6)
P 		1189.7
(-2.6)
P 		1580
C 1269.9
(-2.8)
P 		2866.9
(3)
P 		1762.1
(-1)
P 		1996.9
(-0.1)
P 		1644.9
(-1.4)
P 		1200.5
(-3)
P 		1666
avr 1203.1
(-3) 		2792.5
(3) 		1521.3
(-1.8) 		1863.3
(-0.5) 		1735.7
(-1) 		1261.8
(-2.8) 		1589
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1488
1 2 3 4 range
A 50.9
(-2.9)
A 		1314.7
(3)
P 		1252.5
(2.7)
P 		38.4
(-3)
A 		1276
B 31.2
(-3)
A 		1191
(3)
P 		1186.2
(3)
P 		50.3
(-2.9)
A 		1160
C 36.7
(-2.9)
A 		1411.2
(2.7)
P 		1494.6
(3)
P 		6.2
(-3)
A 		1488
avr 39.6
(-3) 		1305.6
(3) 		1311.1
(3) 		31.6
(-3) 		1280

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 780
1 2 3 4 5 6 range
A 230.6
(-3)
P 		1010.9
(3)
P 		296.2
(-2.5)
P 		445
(-1.4)
P 		559.5
(-0.5)
P 		339.7
(-2.2)
P 		780
B 378.6
(-2.7)
P 		888.1
(3)
P 		350.1
(-3)
P 		487
(-1.5)
P 		693.9
(0.8)
P 		443.6
(-2)
P 		538
C 470.7
(-2.1)
P 		874.8
(3)
P 		448.5
(-2.4)
P 		401.6
(-3)
P 		532.3
(-1.3)
P 		401.9
(-3)
P 		473
avr 360
(-3) 		924.6
(3) 		364.9
(-2.9) 		444.5
(-2.1) 		595.2
(-0.5) 		395.1
(-2.6) 		565
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185334_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15517
Sequence Type Exemplar sequence
Representative Public ID R02F11.1 NCBI
Target Description R02F11.1 /REP_DB=WormBase Gene ID /WP=CE12496 /TR=O16364 /GB=AAB65897.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071886(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071886 NCBI Caenorhabditis elegans R02F11.1 (R02F11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000015699 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4800962:4802224:1 11/11 None
R02F11.1 ENSEMBL cdna:known chromosome:CEL140:V:4800913:4802440:1 gene:R02F11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015687 5/11 Cross Hyb Matching Probes None
SNAP00000015688 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4800961-4802224(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02F11.1
Entrez Gene 178870 Entrez gene
SwissProt O16364 EMBL-EBI
WormBase CE12496 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65897 Hypothetical protein R02F11.1 [Caenorhabditis elegans] ref|NP_504287.1| R02F11.1 [Caenorhabditis elegans] 2.0E-78
blast CAE64202 Hypothetical protein CBG08832 [Caenorhabditis briggsae] 2.0E-76
blast CAB05152 Hypothetical protein C43F9.5 [Caenorhabditis elegans] ref|NP_501957.1| C43F9.5 [Caenorhabditis elegans] 2.0E-16
Sequence
Target Sequence 
>C. ELEGANS:185334_S_AT
caactccacagtattccgtcagaagaggcagtttggatgcccatccaattgctattcctc
atgcagttcctcgtcccagtgccagagatattctgtcgcatctgtctgtgtccaaggatg
ctgttgcccaggaaacaataaccttgataccgcctgctccggaggaccagccgtcgccgc
ctgcctcggaggactctgcggacaaggattcttctgctcgagcaacaactactgctgcag
atgccaatccggaaacagcacgggaccatgtgtaaaccaggtctgcccaaccggattcat
gtgcaacaccaacaactactgttgcccactcggatccggaggagtcctcggatcatgtgt
caacggagtctgcccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTCCACAGTATTCCGTCAGAAG 217 185 114 Antisense
AATTGCTATTCCTCATGCAGTTCCT 317 179 160 Antisense
CCTCGTCCCAGTGCCAGAGATATTC 580 267 182 Antisense
GAGATATTCTGTCGCATCTGTCTGT 164 397 198 Antisense
GTCCAAGGATGCTGTTGCCCAGGAA 708 477 223 Antisense
GGAGGACTCTGCGGACAAGGATTCT 689 515 301 Antisense
CAAGGATTCTTCTGCTCGAGCAACA 538 183 316 Antisense
CTACTGCTGCAGATGCCAATCCGGA 103 227 342 Antisense
CCAACCGGATTCATGTGCAACACCA 42 277 400 Antisense
GGAGGAGTCCTCGGATCATGTGTCA 53 517 451 Antisense
TCATGTGTCAACGGAGTCTGCCCAA 338 623 466 Antisense
Sequence Source Affymetrix Proprietary Database