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[185333_at]

Description F45C12.4 /REP_DB=WormBase Gene ID /WP=CE10442 /TR=O16746 /GB=AAB66204.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 71      6grp_total > 71      4grp_total > 05      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 405
1 2 3 4 range
A 206.3
(-1.9)
P 		149.4
(-3)
A 		155.3
(-2.9)
A 		457.3
(3)
P 		308
B 189.7
(0.1)
P 		52.4
(-3)
A 		201.6
(0.4)
P 		315.9
(3)
P 		264
C 208.4
(-1)
P 		129
(-3)
A 		144.6
(-2.6)
P 		363.2
(3)
P 		234
avr 201.5
(-1) 		110.3
(-3) 		167.2
(-1.7) 		378.8
(3) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 268
1 2 3 4 5 6 range
A 48.7
(-3)
A 		197.8
(0.4)
P 		232.2
(1.2)
P 		309.9
(3)
P 		213.6
(0.8)
P 		128.3
(-1.2)
P 		261
B 84.7
(-3)
A 		271.9
(3)
P 		207.3
(0.9)
P 		235
(1.8)
P 		202.2
(0.8)
P 		160.6
(-0.6)
M 		187
C 121.4
(-3)
P 		151.1
(-2.1)
P 		196.5
(-0.7)
P 		316.6
(3)
P 		162
(-1.8)
P 		190.7
(-0.9)
P 		195
avr 84.9
(-3) 		206.9
(0.6) 		212
(0.8) 		287.2
(3) 		192.6
(0.2) 		159.9
(-0.8) 		202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 75.1
(3)
P 		32.4
(-3)
A 		40.6
(-1.8)
A 		66.9
(1.8)
P 		43
B 60.5
(2.3)
P 		12.9
(-3)
A 		46.7
(0.7)
P 		67.3
(3)
P 		54
C 69
(3)
P 		37.1
(-3)
A 		50.4
(-0.5)
P 		61.2
(1.5)
P 		32
avr 68.2
(3) 		27.5
(-3) 		45.9
(-0.3) 		65.1
(2.5) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 9
(-3)
A 		70.3
(2.3)
P 		50.6
(0.6)
P 		78.6
(3)
P 		64.5
(1.8)
P 		31.2
(-1.1)
P 		70
B 29.5
(-3)
A 		90.5
(3)
P 		50.3
(-1)
P 		62.2
(0.2)
P 		82.1
(2.2)
P 		59.9
(-0)
M 		61
C 45
(-3)
P 		46.1
(-2.7)
P 		50
(-1.4)
P 		63.7
(2.9)
P 		52.4
(-0.7)
P 		63.9
(3)
P 		19
avr 27.8
(-3) 		69
(3) 		50.3
(0.3) 		68.2
(2.9) 		66.3
(2.6) 		51.7
(0.5) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185333_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5173
Sequence Type Exemplar sequence
Representative Public ID F45C12.4 NCBI
Target Description F45C12.4 /REP_DB=WormBase Gene ID /WP=CE10442 /TR=O16746 /GB=AAB66204.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061658(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061658 NCBI Caenorhabditis elegans F45C12.4 (F45C12.4) mRNA, complete cds. 11/11 None
SNAP00000033194 ENSEMBL cdna:SNAP chromosome:CEL140:II:1728576:1729980:1 10/11 None
GENEFINDER00000033211 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1726468:1729980:1 10/11 None
F45C12.4 ENSEMBL cdna:known chromosome:CEL140:II:1728576:1729980:1 gene:F45C12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1728574-1729979(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45C12.4
Entrez Gene 185768 Entrez gene
SwissProt O16746 EMBL-EBI
WormBase CE10442 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66204 Hypothetical protein F45C12.4 [Caenorhabditis elegans] ref|NP_494059.1| F45C12.4 [Caenorhabditis elegans] 1.0E-170
blast AAB66204 Hypothetical protein F45C12.4 [Caenorhabditis elegans] ref|NP_494059.1| F45C12.4 [Caenorhabditis elegans] 1.0E-167
blast AAB66204 Hypothetical protein F45C12.4 [Caenorhabditis elegans] ref|NP_494059.1| F45C12.4 [Caenorhabditis elegans] 1.0E-166
blast AAB66215 Hypothetical protein F45C12.5 [Caenorhabditis elegans] ref|NP_494058.1| F45C12.5 [Caenorhabditis elegans] 2.0E-55
blast CAB05523 Hypothetical protein F57C2.1 [Caenorhabditis elegans] ref|NP_497016.1| F57C2.1 [Caenorhabditis elegans] 1.0E-38
blast CAB05524 Hypothetical protein F57C2.2 [Caenorhabditis elegans] ref|NP_497015.1| F57C2.2 [Caenorhabditis elegans] 1.0E-37
blast CAB05523 Hypothetical protein F57C2.1 [Caenorhabditis elegans] ref|NP_497016.1| F57C2.1 [Caenorhabditis elegans] 1.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 4.1E-22
Pfam IPR000210 EMBL-EBI BTB/POZ domain 4.9E-17
Pfam IPR000210 EMBL-EBI BTB/POZ domain 4.9E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000033211 2 20-42,70-92
Sequence
Target Sequence 
>C. ELEGANS:185333_AT
ggtgttgtgcgacgtacgaatgcgaacttacgccgtttcgattatacgggaatatgttcg
gggcttcgacgaagcatgatggtgtgctggtggtggagaagaagaaattgaatgttagca
aagcgttcctctcctaccactcggacttcttcagcgaccttttctctcgtgaagcccaca
gcaaagatatccctatcgaaggagtaacctatttcgaatttggattgctgataagctgta
ttcacccggaccacacagtttttcctaatgacgaaacagtttccaagctgctcagcctag
ccgacaggttctccatgagagcagtatatcggatggtagaacatcaccttctccattctt
ccagcaacatggggatcagggaagtgataaagactgctgatcagtatggaatgaaggaac
tcatggaaaaatcgatttcaaggatcacttccactgaaaaagtgatggatttgatacaat
ccgcagagtttccagagctctctgctgaaacgaaggcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGTTGTGCGACGTACGAATGCGA 589 499 335 Antisense
GAATGCGAACTTACGCCGTTTCGAT 232 331 352 Antisense
GGGAATATGTTCGGGGCTTCGACGA 37 495 382 Antisense
TTTCTCTCGTGAAGCCCACAGCAAA 565 669 495 Antisense
CTGATAAGCTGTATTCACCCGGACC 265 237 562 Antisense
GACCACACAGTTTTTCCTAATGACG 334 383 583 Antisense
AGCCGACAGGTTCTCCATGAGAGCA 158 83 633 Antisense
ATGGTAGAACATCACCTTCTCCATT 274 51 667 Antisense
CTTCTCCATTCTTCCAGCAACATGG 305 221 682 Antisense
ATCCGCAGAGTTTCCAGAGCTCTCT 315 39 813 Antisense
GAGCTCTCTGCTGAAACGAAGGCCA 444 387 829 Antisense
Sequence Source Affymetrix Proprietary Database