[Home] | [Total List]

[185332_s_at]

Description Y43F8C.15 /REP_DB=WormBase Gene ID /WP=CE21913 /TR=Q9XWM9 /GB=CAA21623.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.1
(-2.3)
A 		2.1
(-3)
A 		2.4
(-2.8)
A 		10.8
(3)
A 		9
B 7
(3)
A 		1.9
(-3)
A 		3.4
(-1.2)
A 		2.8
(-1.9)
A 		5
C 4.4
(-0.4)
A 		2.5
(-3)
A 		4.8
(0.1)
A 		6.9
(3)
A 		4
avr 4.8
(0.4) 		2.2
(-3) 		3.5
(-1.3) 		6.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.8
(-0.4)
A 		1.3
(-3)
A 		3.3
(-2.2)
A 		3.2
(-2.2)
A 		16.1
(3)
A 		5.8
(-1.2)
A 		15
B 2.7
(-1.5)
A 		2.1
(-2.1)
A 		6.8
(3)
A 		2.9
(-1.3)
A 		1.8
(-2.5)
A 		1.3
(-3)
A 		6
C 5.5
(-0.4)
A 		6.4
(0.2)
A 		3.8
(-1.5)
A 		10.8
(3)
A 		1.5
(-3)
A 		1.9
(-2.7)
A 		9
avr 5.3
(0.9) 		3.3
(-2.5) 		4.6
(-0.3) 		5.6
(1.5) 		6.5
(3) 		3
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.1
(0.3)
A 		0.5
(-3)
A 		0.6
(-2.5)
A 		1.6
(3)
A 		1
B 2.2
(3)
A 		0.5
(-3)
A 		0.8
(-1.9)
A 		0.6
(-2.6)
A 		2
C 1.4
(1.2)
A 		0.7
(-3)
A 		1.7
(3)
A 		1.2
(0)
A 		1
avr 1.6
(3) 		0.6
(-3) 		1
(-0.6) 		1.1
(0) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.4
(-1.8)
A 		0.5
(-3)
A 		0.7
(-2.7)
A 		0.8
(-2.6)
A 		4.9
(3)
A 		1.4
(-1.8)
A 		4
B 0.9
(-0.8)
A 		0.7
(-1.9)
A 		1.6
(3)
A 		0.8
(-1.4)
A 		0.7
(-1.9)
A 		0.5
(-3)
A 		1
C 2
(2.3)
A 		2
(2.3)
A 		1
(-1.2)
A 		2.2
(3)
A 		0.5
(-3)
A 		0.6
(-2.6)
A 		2
avr 1.4
(-0) 		1.1
(-1.5) 		1.1
(-1.5) 		1.3
(-0.5) 		2
(3) 		0.8
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185332_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12576
Sequence Type Exemplar sequence
Representative Public ID Y43F8C.15 NCBI
Target Description Y43F8C.15 /REP_DB=WormBase Gene ID /WP=CE21913 /TR=Q9XWM9 /GB=CAA21623.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075414(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075414 NCBI Caenorhabditis elegans Y43F8C.15 (Y43F8C.15) mRNA, complete cds. 11/11 None
GENEFINDER00000039632 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19707773:19711310:-1 11/11 None
Y43F8C.15 ENSEMBL cdna:known chromosome:CEL140:V:19707773:19708609:-1 gene:Y43F8C.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039619 4/11 Cross Hyb Matching Probes None
SNAP00000039621 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19707772-19708335(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8C.15
Entrez Gene 180293 Entrez gene
SwissProt Q9XWM9 EMBL-EBI
WormBase CE21913 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21623 Hypothetical protein Y43F8C.15 [Caenorhabditis elegans] ref|NP_507815.1| Y43F8C.15 [Caenorhabditis elegans] 3.0E-65
blast CAA21623 Hypothetical protein Y43F8C.15 [Caenorhabditis elegans] ref|NP_507815.1| Y43F8C.15 [Caenorhabditis elegans] 4.0E-64
blast CAA21616 Hypothetical protein Y43F8C.16 [Caenorhabditis elegans] ref|NP_507816.2| Y43F8C.16 [Caenorhabditis elegans] 4.0E-9
Sequence
Target Sequence 
>C. ELEGANS:185332_S_AT
gaaacccaggacactagctattccggggaaccaatgatttgtgcgagagtacctggatca
tcgataaatgttggatatttttacgagggacaacaagtcagacctgcatgctctaataga
tgtgtttcgggtggtgggcctcctgcattattatacacgttcaaacctgatcctaggaag
gacgagacaactactgtggagccgaaaccaattcgtcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACCCAGGACACTAGCTATTCCG 663 355 118 Antisense
GACACTAGCTATTCCGGGGAACCAA 687 363 127 Antisense
CCGGGGAACCAATGATTTGTGCGAG 265 263 140 Antisense
TTTGTGCGAGAGTACCTGGATCATC 327 667 155 Antisense
GGATATTTTTACGAGGGACAACAAG 488 509 190 Antisense
GGACAACAAGTCAGACCTGCATGCT 287 527 205 Antisense
TAGATGTGTTTCGGGTGGTGGGCCT 665 651 234 Antisense
TGGGCCTCCTGCATTATTATACACG 432 555 252 Antisense
ATACACGTTCAAACCTGATCCTAGG 65 25 270 Antisense
GGACGAGACAACTACTGTGGAGCCG 118 525 297 Antisense
TGTGGAGCCGAAACCAATTCGTCAC 340 555 312 Antisense
Sequence Source Affymetrix Proprietary Database