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[185330_s_at]

Description R02F11.3 /REP_DB=WormBase Gene ID /WP=CE12500 /TR=O16365 /GB=AAB65899.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 05      4grp_highest_8_8 > 60      4grp_high_8_8 > 17      6grp_highest_nonorm > 70      6grp_total > 05      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 247
1 2 3 4 range
A 405.7
(3)
P 		307
(-1.1)
P 		260.4
(-3)
P 		392.2
(2.4)
P 		145
B 426.2
(3)
P 		299.4
(-0.5)
P 		208.8
(-3)
P 		336.8
(0.5)
P 		217
C 455.9
(3)
P 		301.5
(-2.1)
P 		273.6
(-3)
P 		294.3
(-2.3)
P 		182
avr 429.3
(3) 		302.6
(-1.2) 		247.6
(-3) 		341.1
(0.1) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 423.6
(3)
P 		382.5
(2.1)
P 		210.1
(-1.7)
P 		244.7
(-1)
P 		280.9
(-0.2)
P 		153.2
(-3)
P 		270
B 381.9
(3)
P 		326.3
(1.5)
P 		302.2
(0.8)
P 		214.2
(-1.6)
P 		244.6
(-0.7)
P 		162.1
(-3)
P 		220
C 400.5
(3)
P 		330.6
(1.2)
P 		283.8
(-0.1)
P 		212.9
(-1.9)
P 		293.5
(0.2)
P 		172
(-3)
P 		229
avr 402
(3) 		346.5
(1.6) 		265.4
(-0.4) 		223.9
(-1.5) 		273
(-0.2) 		162.4
(-3) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 147.7
(3)
P 		66.6
(-2.4)
P 		68.1
(-2.3)
P 		57.4
(-3)
P 		90
B 135.9
(3)
P 		73.9
(-1.3)
P 		48.4
(-3)
P 		71.8
(-1.4)
P 		88
C 150.9
(3)
P 		86.7
(-0.8)
P 		95.3
(-0.3)
P 		49.6
(-3)
P 		101
avr 144.8
(3) 		75.7
(-1.9) 		70.6
(-2.2) 		59.6
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 78.1
(-0.5)
P 		136
(3)
P 		45.8
(-2.5)
P 		62.1
(-1.5)
P 		84.8
(-0.1)
P 		37.3
(-3)
P 		99
B 132.9
(3)
P 		108.6
(1.1)
P 		73.4
(-1.7)
P 		56.7
(-3)
P 		99.4
(0.4)
P 		60.4
(-2.7)
P 		76
C 148.4
(3)
P 		100.9
(0.3)
P 		72.2
(-1.3)
P 		42.8
(-3)
P 		95
(-0)
P 		57.6
(-2.2)
P 		106
avr 119.8
(3) 		115.2
(2.6) 		63.8
(-1.9) 		53.9
(-2.8) 		93.1
(0.6) 		51.8
(-3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185330_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15631
Sequence Type Exemplar sequence
Representative Public ID R02F11.3 NCBI
Target Description R02F11.3 /REP_DB=WormBase Gene ID /WP=CE12500 /TR=O16365 /GB=AAB65899.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028894(10), NM_001028895(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028894 NCBI Caenorhabditis elegans R02F11.3a (R02F11.3) mRNA, complete cds. 10/11 None
NM_001028895 NCBI Caenorhabditis elegans R02F11.3b (R02F11.3) mRNA, complete cds. 10/11 None
SNAP00000015689 ENSEMBL cdna:SNAP chromosome:CEL140:V:4802734:4805753:-1 10/11 None
GENEFINDER00000015698 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4802734:4805753:-1 10/11 None
R02F11.3a ENSEMBL cdna:known chromosome:CEL140:V:4802464:4805761:-1 gene:R02F11.3 10/11 None
R02F11.3b ENSEMBL cdna:known chromosome:CEL140:V:4802734:4805761:-1 gene:R02F11.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4802733-4805753(-) 100.0 100.0
Public Domain and Genome References
Ensembl R02F11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65899 Hypothetical protein R02F11.3a [Caenorhabditis elegans] ref|NP_001024065.1| R02F11.3a [Caenorhabditis elegans] 0.0
blast AAV28339 Hypothetical protein R02F11.3b [Caenorhabditis elegans] ref|NP_001024066.1| R02F11.3b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002524 EMBL-EBI Cation efflux protein 2.6E-60
Pfam IPR002524 EMBL-EBI Cation efflux protein 2.6E-60
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024065.1 5 171-193,197-219,240-262,282-304,341-363
NP_001024066.1 5 193-215,219-241,262-284,304-326,363-385
R02F11.3a 5 171-193,197-219,240-262,282-304,341-363
R02F11.3b 5 193-215,219-241,262-284,304-326,363-385
SNAP00000015689 5 171-193,197-219,240-262,282-304,341-363
GENEFINDER00000015698 5 193-215,219-241,262-284,304-326,363-385
Sequence
Target Sequence 
>C. ELEGANS:185330_S_AT
aaatcttcaatatattcgcccacaaagaatcggtgaagaacccaagctcaacgtcaccat
cacctctgtagtcatcatggtgtcaacagttctcgtcaagctgtccctctacctattctg
taaacgatacaaggaaccatcggtcaacgtgctcgcaatggaccatcgcaacgattgcat
ctccaacacggtcgccctgatctgtgcctggctcggcaccaagtactcgtactactttga
cccagccggtgctattgtggtttctatgtacattttgtatacctgggtgcaaactggacg
ggagcatttggcaaagctgtcgggtaaaactgcagagccagagttcattaataggatcat
caaagtctgcttggatcatgatgctcggatttcacatattgatacggtttatgtgtacca
ttttggaagcaagtttttagttgaggtgcacattgtgctcgacgagaatatgatcctcaa
agaatcccatgacatcagtgagaccctccaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTTCAATATATTCGCCCACAA 49 119 936 Antisense
GGTGAAGAACCCAAGCTCAACGTCA 38 501 967 Antisense
ACCATCACCTCTGTAGTCATCATGG 47 87 991 Antisense
TGGTGTCAACAGTTCTCGTCAAGCT 417 553 1013 Antisense
CAAGGAACCATCGGTCAACGTGCTC 45 183 1065 Antisense
GTCAACGTGCTCGCAATGGACCATC 678 463 1078 Antisense
AAGTACTCGTACTACTTTGACCCAG 439 137 1156 Antisense
ACCCAGCCGGTGCTATTGTGGTTTC 8 85 1175 Antisense
ATACCTGGGTGCAAACTGGACGGGA 246 3 1214 Antisense
GTCTGCTTGGATCATGATGCTCGGA 474 471 1300 Antisense
ATGACATCAGTGAGACCCTCCAATC 285 45 1424 Antisense
Sequence Source Affymetrix Proprietary Database