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[185329_s_at]

Description T05A12.3 /REP_DB=WormBase Gene ID /WP=CE04898 /TR=Q9GYK8 /GB=AAF98587.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      4grp_high_8_8 > 06      6grp_total > 86      4grp_total > 02      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 320
1 2 3 4 range
A 135.6
(-2.3)
P 		99.4
(-3)
A 		112.8
(-2.7)
P 		404.1
(3)
P 		305
B 111.5
(-2.2)
P 		94.5
(-2.7)
P 		84.4
(-3)
P 		296.8
(3)
P 		212
C 112
(-2.3)
P 		98.1
(-3)
M 		120.4
(-1.9)
P 		225
(3)
P 		127
avr 119.7
(-2.4) 		97.3
(-3) 		105.9
(-2.8) 		308.6
(3) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 120.3
(-3)
A 		148.7
(-1.8)
P 		127.7
(-2.7)
P 		184.9
(-0.2)
P 		153.3
(-1.6)
P 		259.4
(3)
P 		139
B 98.2
(-3)
P 		173.1
(1.1)
P 		131.4
(-1.2)
P 		152.9
(-0)
P 		164.7
(0.6)
P 		209
(3)
P 		111
C 148.1
(-1.8)
P 		128.7
(-3)
P 		141.1
(-2.3)
P 		194
(0.9)
P 		190.7
(0.7)
P 		229.4
(3)
P 		101
avr 122.2
(-3) 		150.2
(-1.5) 		133.4
(-2.4) 		177.3
(-0) 		169.6
(-0.4) 		232.6
(3) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 49.4
(1.4)
P 		21.6
(-3)
A 		29.5
(-1.7)
P 		59.1
(3)
P 		38
B 35.5
(-0.8)
P 		23.3
(-2.5)
P 		19.6
(-3)
P 		63.3
(3)
P 		44
C 37.1
(0.9)
P 		28.2
(-3)
M 		42
(3)
P 		37.9
(1.2)
P 		14
avr 40.7
(0.4) 		24.4
(-3) 		30.4
(-1.8) 		53.4
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 22.2
(-3)
A 		52.9
(1.5)
P 		27.8
(-2.2)
P 		46.9
(0.6)
P 		46.3
(0.5)
P 		63.2
(3)
P 		41
B 34.2
(-2.7)
P 		57.6
(0.4)
P 		31.9
(-3)
P 		40.5
(-1.9)
P 		66.9
(1.6)
P 		77.9
(3)
P 		46
C 54.9
(-0.2)
P 		39.3
(-2.5)
P 		35.9
(-3)
P 		39
(-2.5)
P 		61.7
(0.8)
P 		76.8
(3)
P 		41
avr 37.1
(-2.2) 		49.9
(-0.3) 		31.9
(-3) 		42.1
(-1.5) 		58.3
(0.9) 		72.6
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185329_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8764
Sequence Type Exemplar sequence
Representative Public ID T05A12.3 NCBI
Target Description T05A12.3 /REP_DB=WormBase Gene ID /WP=CE04898 /TR=Q9GYK8 /GB=AAF98587.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068658(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068658 NCBI Caenorhabditis elegans T05A12.3 (T05A12.3) mRNA, complete cds. 11/11 None
GENEFINDER00000001135 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6883901:6887632:-1 11/11 None
T05A12.3 ENSEMBL cdna:known chromosome:CEL140:IV:6883565:6887635:-1 gene:T05A12.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001130 4/11 Cross Hyb Matching Probes None
SNAP00000001131 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6883906-6887620(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05A12.3
Entrez Gene 177452 Entrez gene
SwissProt Q9GYK8 EMBL-EBI
WormBase CE04898 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF98587 Hypothetical protein T05A12.3 [Caenorhabditis elegans] ref|NP_501059.1| T05A12.3 [Caenorhabditis elegans] 0.0
blast CAE61755 Hypothetical protein CBG05711 [Caenorhabditis briggsae] 1.0E-122
blast CAE61755 Hypothetical protein CBG05711 [Caenorhabditis briggsae] 1.0E-119
Sequence
Target Sequence 
>C. ELEGANS:185329_S_AT
aatcgttgaaacgcgctcgaggagatcaaatgatgaaggaatacgagagagaaaagaaaa
tacaaaagacatctgaaaagccgggaccatcttcttcatcacacaaacaatcatcatcat
cgagttccaaaagtaatggagacaccaaacgaagttatgaagctcgtcgaatggcagaac
tccgagagcaacaaatgcgagaaaaggaacgaaagaagaaaaaggcgatgaatagagaaa
gagattcacgtggaggcggaggaagtttctacaaaggtggtgatgattatagtgatgaag
aaatggatgaggatgagtatgacgacgaggatgacttcagtgatatggatgatttcattg
atgataccgaaatgaatatggatggaatgtgccgaaaggatttcgaagacactttgagaa
tggtcaatcggaaatatgacacggataagtggtctcgtcgtgagaagacgatatcagaac
gagatatgcactcgaactaccgccgaattcagtcagaggagaacttttcgaaacgtgcag
ga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGTTGAAACGCGCTCGAGGAGA 303 169 1388 Antisense
TGAAAAGCCGGGACCATCTTCTTCA 122 573 1461 Antisense
TTCTTCATCACACAAACAATCATCA 205 691 1479 Antisense
ACAATCATCATCATCGAGTTCCAAA 318 115 1494 Antisense
GAAGCTCGTCGAATGGCAGAACTCC 369 343 1546 Antisense
GAGATTCACGTGGAGGCGGAGGAAG 365 397 1628 Antisense
GACGACGAGGATGACTTCAGTGATA 412 379 1708 Antisense
TGACACGGATAAGTGGTCTCGTCGT 634 571 1824 Antisense
CGAGATATGCACTCGAACTACCGCC 215 251 1867 Antisense
AACTACCGCCGAATTCAGTCAGAGG 131 137 1882 Antisense
GGAGAACTTTTCGAAACGTGCAGGA 568 517 1905 Antisense
Sequence Source Affymetrix Proprietary Database