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[185328_at]

Description C10H11.4 /REP_DB=WormBase Gene ID /WP=CE08093 /TR=P91038 /GB=AAB42344.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 93      6grp_total > 68      4grp_total > 08      6grp_highest_sub > Da      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 426
1 2 3 4 range
A 180.8
(-3)
P 		235.3
(-1.6)
P 		328.9
(0.8)
P 		413.2
(3)
P 		232
B 205.2
(-3)
P 		219.6
(-2.8)
P 		352.4
(-0.8)
P 		600.7
(3)
P 		396
C 212.9
(-2.9)
P 		207.8
(-3)
P 		382.2
(-0.4)
P 		607.2
(3)
P 		399
avr 199.6
(-3) 		220.9
(-2.6) 		354.5
(-0.3) 		540.4
(3) 		341

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 882
1 2 3 4 5 6 range
A 233.7
(-2.2)
P 		163.8
(-2.7)
P 		158.7
(-2.7)
P 		113.6
(-3)
P 		216.3
(-2.3)
P 		994.7
(3)
P 		881
B 261
(-1.9)
P 		177.6
(-2.5)
P 		112.5
(-3)
P 		157
(-2.7)
P 		304.3
(-1.6)
P 		949.4
(3)
P 		837
C 257.2
(-1.6)
P 		164.4
(-2.5)
P 		116.4
(-3)
P 		116.5
(-3)
P 		236.4
(-1.8)
P 		738
(3)
P 		622
avr 250.6
(-2) 		168.6
(-2.7) 		129.2
(-3) 		129
(-3) 		252.3
(-2) 		894
(3) 		765
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 65.8
(-0.5)
P 		51.1
(-3)
P 		86
(3)
P 		60.5
(-1.4)
P 		35
B 65.4
(-2.1)
P 		54.2
(-3)
P 		81.7
(-0.8)
P 		128
(3)
P 		74
C 70.5
(-2.1)
P 		59.7
(-3)
P 		133.2
(3)
P 		102.4
(0.5)
P 		74
avr 67.2
(-1.4) 		55
(-3) 		100.3
(3) 		97
(2.6) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 331
1 2 3 4 5 6 range
A 43.1
(-2.6)
P 		58.2
(-2.2)
P 		34.6
(-2.8)
P 		28.8
(-3)
P 		65.3
(-2)
P 		242.2
(3)
P 		213
B 90.8
(-1.8)
P 		59.1
(-2.4)
P 		27.3
(-3)
P 		41.6
(-2.7)
P 		123.6
(-1.2)
P 		354
(3)
P 		327
C 95.3
(-1.1)
P 		50.2
(-2.3)
P 		29.6
(-2.8)
P 		23.4
(-3)
P 		76.5
(-1.6)
P 		247.1
(3)
P 		224
avr 76.4
(-1.9) 		55.8
(-2.4) 		30.5
(-3) 		31.3
(-3) 		88.5
(-1.6) 		281.1
(3) 		251
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185328_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.464
Sequence Type Exemplar sequence
Representative Public ID C10H11.4 NCBI
Target Description C10H11.4 /REP_DB=WormBase Gene ID /WP=CE08093 /TR=P91038 /GB=AAB42344.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059036(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059036 NCBI Caenorhabditis elegans C10H11.4 (C10H11.4) mRNA, complete cds. 11/11 None
GENEFINDER00000015962 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4721216:4735230:1 11/11 None
SNAP00000015953 ENSEMBL cdna:SNAP chromosome:CEL140:I:4727332:4730298:1 11/11 None
C10H11.4 ENSEMBL cdna:known chromosome:CEL140:I:4727309:4730357:1 gene:C10H11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4727331-4730298(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ugt-28
Ensembl C10H11.4
Entrez Gene 172086 Entrez gene
SwissProt P91038 EMBL-EBI
WormBase CE08093 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42344 Udp-glucuronosyltransferase protein 28 [Caenorhabditis elegans] ref|NP_491437.1| C10H11.4 [Caenorhabditis elegans] 0.0
blast NP_503298 Y49C4A.8a [Caenorhabditis elegans] gb|AAK72318.1| Hypothetical protein Y49C4A.8a [Caenorhabditis elegans] 0.0
blast NP_872148 Y49C4A.8b [Caenorhabditis elegans] gb|AAO25979.1| Hypothetical protein Y49C4A.8b [Caenorhabditis elegans] 0.0
blast AAB42345 Udp-glucuronosyltransferase protein 27 [Caenorhabditis elegans] ref|NP_491436.1| C10H11.5 [Caenorhabditis elegans] 0.0
blast AAB42350 Udp-glucuronosyltransferase protein 26 [Caenorhabditis elegans] ref|NP_491435.2| C10H11.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.6E-7
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.3E-18
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.0E-17
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.8E-15
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.7E-20
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.9E-6
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.3E-18
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 8.8E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491437.1 1 498-520
C10H11.4 1 498-520
GENEFINDER00000015962 3 509-531,998-1020,1987-2009
SNAP00000015953 1 498-520
Sequence
Target Sequence 
>C. ELEGANS:185328_AT
gccagatgtcacattcattttcaaatatgaatccgatgaagtctcgtttgctgatggaat
ttcgaatattcacttttcaaaatgggtacctcaaacagctcttctcaatgaccctcgact
ttccgcttttgtaactcatggaggacttggaagtacaatggaattggcttacagtggaaa
accaggagttgttattccagtatttgctgatcaaattcgaaatgctcggatgattgctag
acataacggtgtcatttatctgcataagaattcaatggaaaatgtaaaagtaactcggaa
agcactcacagatgttctttatgatgagagttacaagaaaaatgcagagaaattgacgga
tatcttgatgaatcagccatacagtcccatggaaaatgttatcaaatacacggaatttgt
tggagaacatggcccattccctaacactgatccatatggtcgtcatctcaattacttcca
gaaaacattctttgatatttatgctcttttcgcattgttttatatttctgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAGATGTCACATTCATTTTCAAA 231 281 1008 Antisense
GACTTTCCGCTTTTGTAACTCATGG 239 373 1124 Antisense
GGAGTTGTTATTCCAGTATTTGCTG 37 519 1192 Antisense
GAAATGCTCGGATGATTGCTAGACA 68 363 1226 Antisense
TAACGGTGTCATTTATCTGCATAAG 234 639 1251 Antisense
GTAACTCGGAAAGCACTCACAGATG 602 461 1297 Antisense
GAATCAGCCATACAGTCCCATGGAA 652 327 1377 Antisense
CCATTCCCTAACACTGATCCATATG 81 271 1441 Antisense
TGATCCATATGGTCGTCATCTCAAT 696 565 1455 Antisense
TCTTTGATATTTATGCTCTTTTCGC 579 615 1496 Antisense
TTTCGCATTGTTTTATATTTCTGTA 368 671 1515 Antisense
Sequence Source Affymetrix Proprietary Database