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[185327_at]

Description Y48A6B.10 /REP_DB=WormBase Gene ID /WP=CE24378 /TR=Q9U2B0 /GB=CAA19525.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 11      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 14.9
(-1.6)
A 		11.1
(-2.1)
A 		3.7
(-3)
A 		52.4
(3)
A 		49
B 11.1
(-0)
A 		10.5
(-1.5)
A 		9.9
(-3)
A 		12.3
(3)
A 		2
C 14.8
(-2.5)
A 		19
(-2)
A 		9.3
(-3)
A 		70.5
(3)
A 		61
avr 13.6
(-2) 		13.5
(-2.1) 		7.6
(-3) 		45.1
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 7.7
(0.8)
A 		10.5
(3)
A 		10.3
(2.8)
A 		2.7
(-3)
A 		4.9
(-1.3)
A 		9.3
(2.1)
A 		8
B 6.9
(0.7)
A 		2.5
(-3)
A 		6.9
(0.7)
A 		9.6
(3)
A 		2.7
(-2.8)
A 		5.3
(-0.6)
A 		7
C 8.8
(-0.3)
A 		5.2
(-2.1)
A 		3.3
(-3)
A 		5.3
(-2)
A 		9.1
(-0.2)
A 		15.6
(3)
A 		12
avr 7.8
(-0.1) 		6.1
(-2.3) 		6.8
(-1.4) 		5.9
(-2.6) 		5.6
(-3) 		10.1
(3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.4
(0.9)
A 		2.4
(-1.7)
A 		1
(-3)
A 		7.7
(3)
A 		7
B 3.5
(3)
A 		2.6
(-1.5)
A 		2.3
(-3)
A 		2.6
(-1.5)
A 		1
C 4.9
(-1.8)
A 		5.5
(-1.4)
A 		3.2
(-3)
A 		11.9
(3)
A 		9
avr 4.6
(-0.2) 		3.5
(-1.5) 		2.2
(-3) 		7.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.4
(-1.6)
A 		3.7
(3)
A 		2.2
(0)
A 		0.7
(-3)
A 		1.5
(-1.4)
A 		2.3
(0.2)
A 		3
B 2.4
(2.6)
A 		0.8
(-3)
A 		1.7
(0.2)
A 		2.5
(3)
A 		1.1
(-1.9)
A 		2
(1.2)
A 		2
C 3.3
(0.4)
A 		1.6
(-1.9)
A 		0.8
(-3)
A 		1.1
(-2.6)
A 		3
(0)
A 		5.2
(3)
A 		4
avr 2.4
(0.3) 		2
(-1) 		1.6
(-2.3) 		1.4
(-3) 		1.9
(-1.3) 		3.2
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185327_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8033
Sequence Type Exemplar sequence
Representative Public ID Y48A6B.10 NCBI
Target Description Y48A6B.10 /REP_DB=WormBase Gene ID /WP=CE24378 /TR=Q9U2B0 /GB=CAA19525.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067020(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067020 NCBI Caenorhabditis elegans Y48A6B.10 (Y48A6B.10) mRNA, complete cds. 11/11 None
GENEFINDER00000033025 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11036714:11045769:1 11/11 None
SNAP00000033014 ENSEMBL cdna:SNAP chromosome:CEL140:III:11036861:11050259:1 11/11 None
Y48A6B.10 ENSEMBL cdna:known chromosome:CEL140:III:11041937:11045572:1 gene:Y48A6B.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11041932-11045568(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48A6B.10
Entrez Gene 176535 Entrez gene
SwissProt Q9U2B0 EMBL-EBI
WormBase CE24378 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19525 Hypothetical protein Y48A6B.10 [Caenorhabditis elegans] ref|NP_499421.1| Y48A6B.10 [Caenorhabditis elegans] 0.0
blast CAA19525 Hypothetical protein Y48A6B.10 [Caenorhabditis elegans] ref|NP_499421.1| Y48A6B.10 [Caenorhabditis elegans] 1.0E-159
blast CAA19525 Hypothetical protein Y48A6B.10 [Caenorhabditis elegans] ref|NP_499421.1| Y48A6B.10 [Caenorhabditis elegans] 1.0E-142
blast CAE67615 Hypothetical protein CBG13163 [Caenorhabditis briggsae] 6.0E-48
blast CAE67615 Hypothetical protein CBG13163 [Caenorhabditis briggsae] 6.0E-44
blast CAE67615 Hypothetical protein CBG13163 [Caenorhabditis briggsae] 8.0E-44
Sequence
Target Sequence 
>C. ELEGANS:185327_AT
ctacttccagcagttccacgaaagtatccatcacaatcagagccaccaccgagaagccgt
ccggctccacagaagcctccgattacgataatgcttcagtcgaactcacggctcacggcc
aataatacaattactccaccatcgtcagcttcaacatcgcctccgccaccggatccggaa
aatcagaagaagaagaagaagctcaaaaaggctgatgagtctgaagatcacgaagaagcc
gaggaggaagaggataaggaaaatgagattagtgtcgaggaacgagaggctcgacgtgcg
aaaaatcgaaaaatacgggagaaaaaggccagaaagaaggccgctcaggaggccagacag
gctgccgaggaggcccggcaggccgaacatttgcaacgagaggagaggattctggcgaac
agcgttgtgaggatggccttgcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACTTCCAGCAGTTCCACGAAAGT 709 225 724 Antisense
AGTATCCATCACAATCAGAGCCACC 194 63 746 Antisense
TCCACAGAAGCCTCCGATTACGATA 59 589 789 Antisense
TAATGCTTCAGTCGAACTCACGGCT 413 635 812 Antisense
AACTCACGGCTCACGGCCAATAATA 495 139 826 Antisense
CTCCGCCACCGGATCCGGAAAATCA 499 233 884 Antisense
AGAAGGCCGCTCAGGAGGCCAGACA 14 75 1058 Antisense
GGCCAGACAGGCTGCCGAGGAGGCC 399 543 1074 Antisense
CCGGCAGGCCGAACATTTGCAACGA 532 263 1098 Antisense
GAGGATTCTGGCGAACAGCGTTGTG 580 403 1128 Antisense
AGCGTTGTGAGGATGGCCTTGCAAG 523 81 1144 Antisense
Sequence Source Affymetrix Proprietary Database