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[185326_at]

Description H22D07.1 /REP_DB=WormBase Gene ID /WP=CE17978 /TR=O44536 /GB=AAB94161.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 51      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 108.5
(-0.3)
A 		99.9
(-3)
A 		118.8
(3)
A 		100
(-3)
A 		19
B 84.9
(-0.3)
A 		106.2
(2.5)
A 		109.9
(3)
A 		64.8
(-3)
A 		45
C 149
(0.7)
A 		166.8
(3)
A 		120.4
(-3)
A 		132.5
(-1.4)
A 		46
avr 114.1
(0.6) 		124.3
(3) 		116.4
(1.1) 		99.1
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 100.9
(-0.6)
A 		90.6
(-1.1)
A 		53.6
(-3)
A 		66.1
(-2.4)
A 		166.5
(2.8)
A 		171.3
(3)
P 		118
B 89.2
(-0.6)
A 		36.9
(-3)
A 		85.3
(-0.8)
A 		169.3
(3)
A 		149.3
(2.1)
P 		135.9
(1.5)
P 		132
C 164.3
(3)
A 		97.1
(0.3)
A 		16.2
(-3)
A 		93.6
(0.1)
A 		150.2
(2.4)
A 		151.7
(2.5)
P 		148
avr 118.1
(0.8) 		74.9
(-1.7) 		51.7
(-3) 		109.7
(0.4) 		155.3
(3) 		153
(2.9) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 39.5
(3)
A 		21.7
(-1.3)
A 		31.1
(1)
A 		14.6
(-3)
A 		25
B 27.1
(3)
A 		26.2
(2.6)
A 		25.5
(2.3)
A 		13.8
(-3)
A 		13
C 49.3
(3)
A 		48
(2.7)
A 		42
(1.4)
A 		22.3
(-3)
A 		27
avr 38.6
(3) 		32
(1.2) 		32.9
(1.4) 		16.9
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 18.6
(-1.9)
A 		32.2
(0.2)
A 		11.7
(-3)
A 		16.8
(-2.2)
A 		50.2
(3)
A 		41.7
(1.7)
P 		39
B 31
(-0.7)
A 		12.3
(-3)
A 		20.7
(-2)
A 		44.8
(1)
A 		60.6
(3)
P 		50.7
(1.8)
P 		48
C 60.9
(3)
A 		29.6
(-0.3)
A 		4.1
(-3)
A 		18.8
(-1.4)
A 		48.6
(1.7)
A 		50.8
(1.9)
P 		57
avr 36.8
(0.6) 		24.7
(-1.2) 		12.2
(-3) 		26.8
(-0.9) 		53.1
(3) 		47.7
(2.2) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185326_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15148
Sequence Type Exemplar sequence
Representative Public ID H22D07.1 NCBI
Target Description H22D07.1 /REP_DB=WormBase Gene ID /WP=CE17978 /TR=O44536 /GB=AAB94161.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071827
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000015756 ENSEMBL cdna:SNAP chromosome:CEL140:V:4448266:4450363:-1 11/11 None
GENEFINDER00000015758 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4448251:4454548:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4448250-4455530(-) 95.91 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94161 Hypothetical protein H22D07.1 [Caenorhabditis elegans] ref|NP_504228.2| H22D07.1 [Caenorhabditis elegans] 0.0
blast CAE56777 Hypothetical protein CBG24583 [Caenorhabditis briggsae] 0.0
blast CAE56776 Hypothetical protein CBG24582 [Caenorhabditis briggsae] 1.0E-100
blast ABA61861 Hypothetical protein Y47D7A.16 [Caenorhabditis elegans] 1.0E-55
blast CAE56775 Hypothetical protein CBG24581 [Caenorhabditis briggsae] 9.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.7E-9
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.7E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000015756 6 5-27,42-64,77-96,111-133,140-162,184-206
GENEFINDER00000015758 13 37-59,72-91,111-133,158-180,238-260,365-387,397-419,421-443,458-480,487-509,524-546,553-575,597-619
Sequence
Target Sequence 
>C. ELEGANS:185326_AT
aaatcattcacaattcctactgctcctcttataattgctctattatcactagcatgctgt
tgtcaactgggactctcatttttctggagcgactattcggaaatattcggtgcaccacgt
tcatggcctctctactcactacttttcggattagccatcgttaatgcaatgtcaaatgtg
cttttcatgccgttcatggcacaatttcatccggcctacctgaatgcctatttcgttgga
atgggcttaagctcacttgctccgagcctactctcgttggctcagggaacatcgatgttc
aaatgtgacgagaaaggcgtcgcagagagatttccgccgaatttctcggtttctatattc
tttttcgtgattttctcattcacctgtgtcgcgctgttcgcatttattgcgctctaccgt
tctggcgcgcatactcatttcgcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCATTCACAATTCCTACTGCTC 705 117 1777 Antisense
ACTGCTCCTCTTATAATTGCTCTAT 193 99 1795 Antisense
CAACTGGGACTCTCATTTTTCTGGA 504 185 1840 Antisense
AATATTCGGTGCACCACGTTCATGG 592 173 1878 Antisense
TCTCTACTCACTACTTTTCGGATTA 284 613 1905 Antisense
GCCTACCTGAATGCCTATTTCGTTG 706 279 1990 Antisense
GAATGGGCTTAAGCTCACTTGCTCC 109 333 2015 Antisense
TACTCTCGTTGGCTCAGGGAACATC 605 645 2045 Antisense
GAGAGATTTCCGCCGAATTTCTCGG 542 395 2101 Antisense
GTGTCGCGCTGTTCGCATTTATTGC 399 487 2162 Antisense
CTGGCGCGCATACTCATTTCGCGAC 603 241 2198 Antisense
Sequence Source Affymetrix Proprietary Database