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[185325_at]

Description T02G5.12 /REP_DB=WormBase Gene ID /WP=CE04864 /TR=Q22109 /GB=AAA82406.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 40      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 56.8
(-3)
A 		57.2
(-3)
A 		116
(2)
A 		127.4
(3)
P 		71
B 51
(-3)
A 		147.8
(2.6)
P 		155.1
(3)
P 		90.1
(-0.7)
P 		104
C 59.4
(-3)
A 		138
(3)
A 		131.5
(2.5)
P 		62.2
(-2.8)
A 		79
avr 55.7
(-3) 		114.3
(1.5) 		134.2
(3) 		93.2
(-0.1) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 429
1 2 3 4 5 6 range
A 18.7
(-3)
A 		40.7
(-2.6)
A 		108.8
(-1.5)
P 		157.3
(-0.7)
P 		346.6
(2.3)
P 		386.7
(3)
P 		368
B 66.3
(-3)
A 		75.7
(-2.9)
A 		130.6
(-2)
P 		232.8
(-0.4)
P 		448.1
(3)
P 		351.7
(1.5)
P 		382
C 20.4
(-3)
A 		89.7
(-1.8)
A 		132
(-1)
P 		215.6
(0.5)
P 		318.3
(2.3)
P 		357.2
(3)
P 		337
avr 35.1
(-3) 		68.7
(-2.4) 		123.8
(-1.4) 		201.9
(-0) 		371
(3) 		365.2
(2.9) 		336
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 20.7
(-0.2)
A 		12.4
(-3)
A 		30.3
(3)
A 		18.6
(-0.9)
P 		18
B 16.3
(-3)
A 		36.5
(3)
P 		36
(2.9)
P 		19.2
(-2.1)
P 		20
C 19.7
(-1.4)
A 		39.7
(2)
A 		45.8
(3)
P 		10.5
(-3)
A 		35
avr 18.9
(-2.2) 		29.5
(0.8) 		37.4
(3) 		16.1
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 3.5
(-3)
A 		14.5
(-2.3)
A 		23.7
(-1.8)
P 		39.9
(-0.8)
P 		104.6
(3)
P 		94.2
(2.4)
P 		101
B 23.1
(-3)
A 		25.2
(-2.9)
A 		31.7
(-2.7)
P 		61.7
(-1.5)
P 		182.1
(3)
P 		131.2
(1.1)
P 		159
C 7.5
(-3)
A 		27.4
(-1.9)
A 		33.6
(-1.6)
P 		43.4
(-1.1)
P 		103
(2.1)
P 		119.6
(3)
P 		112
avr 11.4
(-3) 		22.4
(-2.4) 		29.7
(-2.1) 		48.3
(-1.1) 		129.9
(3) 		115
(2.2) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185325_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5453
Sequence Type Exemplar sequence
Representative Public ID T02G5.12 NCBI
Target Description T02G5.12 /REP_DB=WormBase Gene ID /WP=CE04864 /TR=Q22109 /GB=AAA82406.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063063(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063063 NCBI Caenorhabditis elegans T02G5.12 (T02G5.12) mRNA, complete cds. 11/11 None
SNAP00000014292 ENSEMBL cdna:SNAP chromosome:CEL140:II:7096478:7098520:-1 11/11 None
GENEFINDER00000014299 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7096478:7098520:-1 11/11 None
T02G5.12 ENSEMBL cdna:known chromosome:CEL140:II:7096293:7098523:-1 gene:T02G5.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7096473-7098516(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02G5.12
Entrez Gene 187995 Entrez gene
SwissProt Q22109 EMBL-EBI
WormBase CE04864 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_495464 T02G5.12 [Caenorhabditis elegans] gb|AAA82406.1| Hypothetical protein T02G5.12 [Caenorhabditis elegans] 0.0
blast AAB71245 Hypothetical protein C10E2.6 [Caenorhabditis elegans] ref|NP_510705.1| C10E2.6 [Caenorhabditis elegans] 0.0
blast CAE69894 Hypothetical protein CBG16244 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495464.1 11 21-43,58-80,92-114,118-140,153-175,350-372,385-407,427-444,456-478,488-510,517-539
T02G5.12 11 21-43,58-80,92-114,118-140,153-175,350-372,385-407,427-444,456-478,488-510,517-539
SNAP00000014292 12 23-45,58-80,84-106,113-135,148-170,177-199,385-407,420-442,462-479,491-513,523-545,552-574
GENEFINDER00000014299 12 23-45,58-80,84-106,113-135,148-170,177-199,385-407,420-442,462-479,491-513,523-545,552-574
Sequence
Target Sequence 
>C. ELEGANS:185325_AT
gaaggaacattccttctcttcgccatttcaaatcttttaacttcggttggcttcaattca
ccactttacttccttccactccacgttactaatattttatctgataataatgtatcagga
aacattctttcggtgtacggaactgcaaacacaatcggccgtctcatctttggagttgtg
gctgatcagaagctgccccttccagcaggtcttggagatgacactgctcgcaatcgtctc
tggatgtacaatatttctctgactatttgtggaattgtaaccgccttctgctacaagttt
gatggatatattctattggacatctacgctgtactcttcggatttacgattgcatcgtat
gtttgtctgacctctgtcattcttgttgatctgttaggacttgacaagcttacaaacgcg
ttcggattattgctcctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGAACATTCCTTCTCTTCGCCA 448 333 1054 Antisense
GTTGGCTTCAATTCACCACTTTACT 88 437 1099 Antisense
CTTCCACTCCACGTTACTAATATTT 107 219 1126 Antisense
GGAACTGCAAACACAATCGGCCGTC 59 529 1192 Antisense
GGCCGTCTCATCTTTGGAGTTGTGG 589 543 1210 Antisense
TTGTGGCTGATCAGAAGCTGCCCCT 485 703 1229 Antisense
GGAGATGACACTGCTCGCAATCGTC 354 519 1267 Antisense
CTACGCTGTACTCTTCGGATTTACG 675 225 1377 Antisense
TGCATCGTATGTTTGTCTGACCTCT 134 579 1404 Antisense
ACCTCTGTCATTCTTGTTGATCTGT 462 87 1423 Antisense
AACGCGTTCGGATTATTGCTCCTGT 49 147 1468 Antisense
Sequence Source Affymetrix Proprietary Database