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[185323_at]

Description Y46H3A.5 /REP_DB=WormBase Gene ID /WP=CE24308 /TR=Q9N4W6 /GB=AAF60619.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 06      6grp_total > 01      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 58.6
(-2.8)
A 		54.4
(-3)
P 		60.6
(-2.7)
A 		196.9
(3)
P 		143
B 52
(-3)
P 		51.3
(-3)
A 		59.3
(-2.7)
M 		242.4
(3)
P 		191
C 50
(-3)
A 		76.9
(-1.9)
A 		50.8
(-3)
P 		191.8
(3)
P 		142
avr 53.5
(-3) 		60.9
(-2.7) 		56.9
(-2.9) 		210.4
(3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 33.4
(1.4)
A 		30.9
(1)
A 		21
(-0.8)
A 		42.3
(3)
A 		8.8
(-3)
A 		41
(2.8)
A 		34
B 65.1
(0.4)
P 		100.3
(3)
P 		23.6
(-2.7)
A 		19
(-3)
A 		57.7
(-0.1)
A 		34.4
(-1.9)
A 		81
C 43.5
(-0.7)
A 		62.4
(0.7)
P 		92.5
(3)
A 		13
(-3)
A 		78.4
(1.9)
A 		28.6
(-1.8)
A 		80
avr 47.3
(0.4) 		64.5
(3) 		45.7
(0.2) 		24.8
(-3) 		48.3
(0.6) 		34.7
(-1.5) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 21.3
(0.4)
A 		11.8
(-3)
P 		15.8
(-1.6)
A 		28.8
(3)
P 		17
B 16.6
(-2.4)
P 		12.7
(-3)
A 		13.7
(-2.8)
M 		51.7
(3)
P 		39
C 16.6
(-3)
A 		22.1
(-0.9)
A 		17.7
(-2.6)
P 		32.3
(3)
P 		16
avr 18.2
(-2.3) 		15.5
(-3) 		15.7
(-2.9) 		37.6
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 6.2
(-0.4)
A 		11
(3)
A 		4.6
(-1.6)
A 		10.7
(2.8)
A 		2.6
(-3)
A 		10
(2.3)
A 		8
B 22.7
(0.7)
P 		33.4
(3)
P 		5.7
(-2.9)
A 		5
(-3)
A 		23.5
(0.9)
A 		12.8
(-1.4)
A 		28
C 16.1
(0.6)
A 		19
(1.3)
P 		23.6
(2.5)
A 		2.6
(-3)
A 		25.4
(3)
A 		9.6
(-1.2)
A 		23
avr 15
(0.6) 		21.1
(3) 		11.3
(-0.9) 		6.1
(-3) 		17.2
(1.4) 		10.8
(-1.1) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185323_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15141
Sequence Type Exemplar sequence
Representative Public ID Y46H3A.5 NCBI
Target Description Y46H3A.5 /REP_DB=WormBase Gene ID /WP=CE24308 /TR=Q9N4W6 /GB=AAF60619.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071110(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071110 NCBI Caenorhabditis elegans Y46H3A.5 (Y46H3A.5) mRNA, complete cds. 11/11 None
Y46H3A.5 ENSEMBL cdna:known chromosome:CEL140:V:1812516:1813448:-1 gene:Y46H3A.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020852 4/11 Cross Hyb Matching Probes None
GENEFINDER00000020860 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1812515-1813448(-) 60.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46H3A.5
Entrez Gene 189963 Entrez gene
SwissProt Q9N4W6 EMBL-EBI
WormBase CE24308 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503511 Y46H3A.5 [Caenorhabditis elegans] gb|AAF60619.1| Hypothetical protein Y46H3A.5 [Caenorhabditis elegans] 1.0E-70
Sequence
Target Sequence 
>C. ELEGANS:185323_AT
aaacaagcaattcggccatgccaataaaataaaaccgaatttttttgcgatgtggaaatt
actaatgatttttatagttcagctttcgaaaaatttctgcgcatggtacgatgagaattt
catgaggaacatcgtggtgcctctaattgcagccacacattctccaaatcgtagtgagat
tttcaatattaatcggcaaaattgtacgcatcttatgcagatcaaaatttttttgccaga
aattataatttccggcaaatctgcaaaccggcaatttgccgattttccaaatttgtcggc
aaaaaaatttgcggaaattgctgcccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACAAGCAATTCGGCCATGCCAAT 266 129 24 Antisense
TAAAACCGAATTTTTTTGCGATGTG 252 639 53 Antisense
TGATTTTTATAGTTCAGCTTTCGAA 385 563 89 Antisense
AGCTTTCGAAAAATTTCTGCGCATG 380 79 104 Antisense
AATTTCTGCGCATGGTACGATGAGA 25 175 115 Antisense
ATTTCATGAGGAACATCGTGGTGCC 710 15 140 Antisense
ACATCGTGGTGCCTCTAATTGCAGC 641 105 152 Antisense
TAATTGCAGCCACACATTCTCCAAA 216 635 167 Antisense
GCCACACATTCTCCAAATCGTAGTG 399 279 175 Antisense
ATAATTTCCGGCAAATCTGCAAACC 394 25 268 Antisense
AAATTTGCGGAAATTGCTGCCCACC 176 117 328 Antisense
Sequence Source Affymetrix Proprietary Database