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[185322_s_at]

Description T04C9.4A /REP_DB=WormBase Gene ID /WP=CE26618 /TR=Q9GP94 /GB=AAG38889.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 01      4grp_high_8_8 > 54      6grp_highest_nonorm > 76      6grp_total > 92      4grp_total > 50      6grp_cgc > 99      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1239
1 2 3 4 range
A 764.5
(-2.1)
P 		1480.9
(2.8)
P 		1512.6
(3)
P 		633
(-3)
P 		880
B 824.3
(-1.1)
P 		1398.6
(2)
P 		1582.8
(3)
P 		468.5
(-3)
P 		1114
C 767.5
(-1.8)
P 		1707.5
(3)
P 		1305.1
(0.9)
P 		543.4
(-3)
P 		1164
avr 785.4
(-1.5) 		1529
(3) 		1466.8
(2.6) 		548.3
(-3) 		981

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 692
1 2 3 4 5 6 range
A 1069.8
(-0.1)
P 		1129.7
(0.6)
P 		1333
(3)
P 		931.6
(-1.8)
P 		1055.4
(-0.3)
P 		831.3
(-3)
P 		502
B 1047.2
(-0.3)
P 		1085.4
(0.1)
P 		923.1
(-1.5)
P 		775.2
(-3)
P 		1382.8
(3)
P 		805.7
(-2.7)
P 		608
C 1162.1
(0.9)
P 		1107.6
(0.4)
P 		986.4
(-0.6)
P 		786.8
(-2.4)
P 		1406.2
(3)
P 		714.7
(-3)
P 		692
avr 1093
(0.7) 		1107.6
(0.9) 		1080.8
(0.6) 		831.2
(-2.4) 		1281.5
(3) 		783.9
(-3) 		498
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 399
1 2 3 4 range
A 278.4
(0.7)
P 		321.5
(1.5)
P 		395.4
(3)
P 		92.7
(-3)
P 		303
B 262.8
(0.7)
P 		345.4
(2.5)
P 		366.8
(3)
P 		99.8
(-3)
P 		267
C 254.1
(-0.6)
P 		490.9
(3)
P 		454.9
(2.5)
P 		91.6
(-3)
P 		399
avr 265.1
(0.3) 		385.9
(2.6) 		405.7
(3) 		94.7
(-3) 		311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 404
1 2 3 4 5 6 range
A 197.2
(-3)
P 		401.8
(3)
P 		290.3
(-0.3)
P 		236.3
(-1.9)
P 		318.5
(0.6)
P 		202.4
(-2.8)
P 		205
B 364.4
(-0.3)
P 		361.3
(-0.4)
P 		224.1
(-2.7)
P 		205.3
(-3)
P 		561.8
(3)
P 		300.4
(-1.4)
P 		357
C 430.7
(2.5)
P 		338
(0.6)
P 		251.1
(-1.1)
P 		158.2
(-3)
P 		455
(3)
P 		239.2
(-1.4)
P 		297
avr 330.8
(0.2) 		367
(1.1) 		255.2
(-1.6) 		199.9
(-3) 		445.1
(3) 		247.3
(-1.8) 		245
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185322_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7186
Sequence Type Exemplar sequence
Representative Public ID T04C9.4A NCBI
Target Description T04C9.4A /REP_DB=WormBase Gene ID /WP=CE26618 /TR=Q9GP94 /GB=AAG38889.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065901(9), NM_065899(9), NM_065900(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065901 NCBI Caenorhabditis elegans MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) family member (mlp-1) (mlp-1) mRNA, complete cds. 9/11 None
NM_065899 NCBI Caenorhabditis elegans MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) family member (mlp-1) (mlp-1) mRNA, complete cds. 9/11 None
NM_065900 NCBI Caenorhabditis elegans MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) family member (mlp-1) (mlp-1) mRNA, complete cds. 9/11 A 
T04C9.4a ENSEMBL cdna:known chromosome:CEL140:III:5971535:5973604:-1 gene:T04C9.4 9/11 None
T04C9.4b ENSEMBL cdna:known chromosome:CEL140:III:5971536:5973605:-1 gene:T04C9.4 9/11 None
T04C9.4c ENSEMBL cdna:known chromosome:CEL140:III:5971665:5973604:-1 gene:T04C9.4 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027249 5/11 Cross Hyb Matching Probes None
GENEFINDER00000027256 5/11 Cross Hyb Matching Probes None
SNAP00000027250 4/11 Cross Hyb Matching Probes None
GENEFINDER00000027259 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5972498-5973764(-) 100.0 100.0
Public Domain and Genome References
Ensembl T04C9.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM97946 Mlp/crp family (muscle lim protein/cysteine-rich protein) protein 1, isoform c [Caenorhabditis elegans] ref|NP_498301.2| MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) family member (mlp-1) [Caenorhabditis elegans] 1.0E-101
blast CAE64344 Hypothetical protein CBG09030 [Caenorhabditis briggsae] 3.0E-95
blast AAM97945 Mlp/crp family (muscle lim protein/cysteine-rich protein) protein 1, isoform b [Caenorhabditis elegans] ref|NP_498300.2| MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) family member (mlp-1) [Caenorhabditis elegans] 9.0E-67
blast AAM97945 Mlp/crp family (muscle lim protein/cysteine-rich protein) protein 1, isoform b [Caenorhabditis elegans] ref|NP_498300.2| MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) family member (mlp-1) [Caenorhabditis elegans] 1.0E-55
blast AAM97944 Mlp/crp family (muscle lim protein/cysteine-rich protein) protein 1, isoform a [Caenorhabditis elegans] ref|NP_498302.2| MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) family member (mlp-1) [Caenorhabditis elegans] 1.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 7.5E-14
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 6.7E-14
Sequence
Target Sequence 
>C. ELEGANS:185322_S_AT
ccattgagtcaccttacagatcccgcccacaccattttcaaagtttcttcaatgccattc
aagcctgtggagcacccaaaatgcccgaagtgcggcaaaagtgtgtacgccgcagaggag
atgtccgccggcggatacaaatggcacaagttctgcttcaagtgcaacatgtgcaacaag
cttctcgactcgtgcactgttgctccgcatgaggcagaactctactgcaaacagtgccac
ggacgcaaattcggaccaaagggagtcggatttggacttggtgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATTGAGTCACCTTACAGATCCCG 597 267 37 Antisense
CGCCCACACCATTTTCAAAGTTTCT 270 255 60 Antisense
TGCCATTCAAGCCTGTGGAGCACCC 650 585 89 Antisense
TGGAGCACCCAAAATGCCCGAAGTG 340 549 104 Antisense
TGTACGCCGCAGAGGAGATGTCCGC 41 561 140 Antisense
GTCCGCCGGCGGATACAAATGGCAC 71 475 159 Antisense
TGCAACAAGCTTCTCGACTCGTGCA 401 577 208 Antisense
GTTGCTCCGCATGAGGCAGAACTCT 65 441 235 Antisense
TACTGCAAACAGTGCCACGGACGCA 479 647 259 Antisense
GCCACGGACGCAAATTCGGACCAAA 648 277 272 Antisense
GGGAGTCGGATTTGGACTTGGTGCT 30 497 297 Antisense
Sequence Source Affymetrix Proprietary Database