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[185321_at]

Description Y39E4B.13 /REP_DB=WormBase Gene ID /WP=CE21723 /TR=Q9U2L0 /GB=CAB54422.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 32      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 3.7
(-3)
A 		4.6
(-2.9)
A 		73.9
(3)
A 		60.9
(1.9)
A 		70
B 5.4
(-3)
A 		27.6
(3)
A 		12.1
(-1.2)
A 		5.8
(-2.9)
A 		22
C 27.9
(3)
A 		10.7
(-1.8)
A 		6.3
(-3)
A 		10.5
(-1.8)
A 		22
avr 12.3
(-3) 		14.3
(-2.4) 		30.8
(3) 		25.7
(1.3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 4.3
(-0.6)
A 		5.8
(3)
A 		4.9
(0.8)
A 		4.1
(-1.1)
A 		3.3
(-3)
A 		4.6
(0.1)
A 		3
B 4
(-2.4)
A 		2.6
(-3)
A 		4.2
(-2.3)
A 		16
(3)
A 		13.9
(2.1)
A 		5.2
(-1.8)
A 		13
C 21.7
(-0.3)
A 		2.9
(-3)
A 		16.2
(-1.1)
A 		3.8
(-2.9)
A 		6.3
(-2.5)
A 		44.2
(3)
A 		41
avr 10
(-0.4) 		3.8
(-3) 		8.4
(-1.1) 		8
(-1.2) 		7.8
(-1.3) 		18
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.3
(-2.9)
A 		1
(-3)
A 		19.3
(3)
A 		8.9
(-0.4)
A 		18
B 1.7
(-2.5)
A 		6.8
(3)
A 		2.8
(-1.3)
A 		1.2
(-3)
A 		6
C 9.2
(3)
A 		3.1
(-1.9)
A 		2.2
(-2.7)
A 		1.8
(-3)
A 		7
avr 4.1
(-2.3) 		3.6
(-3) 		8.1
(3) 		4
(-2.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.8
(-3)
A 		2.1
(3)
A 		1.1
(-1.6)
A 		1
(-2.1)
A 		1
(-2.1)
A 		1.1
(-1.6)
A 		1
B 1.4
(-2.4)
A 		0.9
(-3)
A 		1
(-2.9)
A 		4.2
(1.2)
A 		5.6
(3)
A 		1.9
(-1.7)
A 		5
C 8
(0.1)
A 		0.9
(-3)
A 		4.1
(-1.6)
A 		0.8
(-3)
A 		2
(-2.5)
A 		14.8
(3)
A 		14
avr 3.4
(-0.3) 		1.3
(-3) 		2.1
(-2) 		2
(-2.1) 		2.9
(-0.9) 		5.9
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185321_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6455
Sequence Type Exemplar sequence
Representative Public ID Y39E4B.13 NCBI
Target Description Y39E4B.13 /REP_DB=WormBase Gene ID /WP=CE21723 /TR=Q9U2L0 /GB=CAB54422.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067311(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067311 NCBI Caenorhabditis elegans Y39E4B.13 (Y39E4B.13) mRNA, complete cds. 11/11 None
SNAP00000012010 ENSEMBL cdna:SNAP chromosome:CEL140:III:13092338:13100291:1 11/11 None
GENEFINDER00000012026 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13092338:13093126:1 11/11 None
Y39E4B.13 ENSEMBL cdna:known chromosome:CEL140:III:13092338:13093126:1 gene:Y39E4B.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13092333-13093122(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39E4B.13
Entrez Gene 189756 Entrez gene
SwissProt Q9U2L0 EMBL-EBI
WormBase CE21723 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54422 Hypothetical protein Y39E4B.13 [Caenorhabditis elegans] ref|NP_499712.1| Y39E4B.13 [Caenorhabditis elegans] 1.0E-65
blast CAB54422 Hypothetical protein Y39E4B.13 [Caenorhabditis elegans] ref|NP_499712.1| Y39E4B.13 [Caenorhabditis elegans] 2.0E-49
blast CAE73911 Hypothetical protein CBG21520 [Caenorhabditis briggsae] 5.0E-19
blast CAB16510 Hypothetical protein Y57G11C.8 [Caenorhabditis elegans] ref|NP_502784.1| Y57G11C.8 [Caenorhabditis elegans] 5.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499712.1 1 15-34
Y39E4B.13 1 15-34
SNAP00000012010 1 15-34
GENEFINDER00000012026 1 15-34
Sequence
Target Sequence 
>C. ELEGANS:185321_AT
tgattagagccaagtgcgccggcggcggtggcgagaaatcgttagtgctaggtgcgccgg
cggtggccaaaacggcgatcgcactatttaccatcttttgtgcaaatcggaaaaagaaga
atggggcagatggagaaggcggcgatgtctctcttgttcaaccgggcgctcagaagaacg
cgccggcacctactacaacaggagcaaaaccaatcaatgacgatttctcggttggtgttc
cattgccgaatcaaccgttggccgataagtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATTAGAGCCAAGTGCGCCGGCGG 452 563 14 Antisense
CGCCGGCGGCGGTGGCGAGAAATCG 289 257 30 Antisense
GAAATCGTTAGTGCTAGGTGCGCCG 90 363 48 Antisense
GCCGGCGGTGGCCAAAACGGCGATC 436 281 69 Antisense
AAACGGCGATCGCACTATTTACCAT 67 127 83 Antisense
TGGAGAAGGCGGCGATGTCTCTCTT 486 549 144 Antisense
TTGTTCAACCGGGCGCTCAGAAGAA 154 707 167 Antisense
CCGGCACCTACTACAACAGGAGCAA 568 263 196 Antisense
TGACGATTTCTCGGTTGGTGTTCCA 138 571 231 Antisense
TTGGTGTTCCATTGCCGAATCAACC 25 709 245 Antisense
GAATCAACCGTTGGCCGATAAGTCA 398 179 261 Antisense
Sequence Source Affymetrix Proprietary Database