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[185320_at]

Description F41E6.10 /REP_DB=WormBase Gene ID /WP=CE10262 /TR=O16460 /GB=AAB65950.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 3
(-3)
A 		4.6
(-2.7)
A 		37.9
(3)
A 		23.3
(0.5)
A 		35
B 4.7
(-2.6)
A 		17.1
(2.8)
A 		17.5
(3)
A 		3.7
(-3)
A 		14
C 16.7
(-1.4)
A 		19.6
(-0.9)
A 		6.2
(-3)
A 		44.7
(3)
A 		39
avr 8.1
(-3) 		13.8
(-0.8) 		20.5
(1.7) 		23.9
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 36.1
(3)
A 		3.9
(-3)
A 		18.3
(-0.3)
A 		23.5
(0.7)
A 		10.7
(-1.7)
A 		3.9
(-3)
A 		32
B 21.2
(2.9)
A 		21.4
(3)
A 		9.4
(-1.3)
A 		4.8
(-3)
A 		6.3
(-2.5)
A 		8
(-1.8)
A 		17
C 5.6
(-2.4)
A 		16.6
(-0.4)
A 		3.6
(-2.8)
A 		34.9
(3)
A 		2.4
(-3)
A 		9.3
(-1.7)
A 		33
avr 21
(3) 		14
(0.1) 		10.4
(-1.4) 		21.1
(3) 		6.5
(-3) 		7.1
(-2.8) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.1
(-2.9)
A 		1
(-3)
A 		9.9
(3)
A 		3.4
(-1.4)
A 		9
B 1.5
(-1.8)
A 		4.2
(3)
A 		4.1
(2.8)
A 		0.8
(-3)
A 		3
C 5.5
(0.7)
A 		5.6
(0.8)
A 		2.2
(-3)
A 		7.5
(3)
A 		5
avr 2.7
(-3) 		3.6
(-1) 		5.4
(3) 		3.9
(-0.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 6.7
(3)
A 		1.4
(-2.6)
A 		4
(0.2)
A 		6
(2.3)
A 		3.2
(-0.7)
A 		1
(-3)
A 		6
B 7.4
(3)
A 		7.1
(2.7)
A 		2.3
(-2)
A 		1.3
(-3)
A 		2.6
(-1.7)
A 		3
(-1.3)
A 		6
C 2.1
(-1.7)
A 		5.1
(1.2)
A 		0.9
(-2.9)
A 		7
(3)
A 		0.8
(-3)
A 		3.1
(-0.8)
A 		6
avr 5.4
(3) 		4.5
(1.3) 		2.4
(-2.6) 		4.8
(1.9) 		2.2
(-3) 		2.4
(-2.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185320_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11655
Sequence Type Exemplar sequence
Representative Public ID F41E6.10 NCBI
Target Description F41E6.10 /REP_DB=WormBase Gene ID /WP=CE10262 /TR=O16460 /GB=AAB65950.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072820(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072820 NCBI Caenorhabditis elegans F41E6.10 (F41E6.10) mRNA, complete cds. 11/11 None
F41E6.10 ENSEMBL cdna:known chromosome:CEL140:V:8613505:8613856:-1 gene:F41E6.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8613505-8613857(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41E6.10
Entrez Gene 185620 Entrez gene
SwissProt O16460 EMBL-EBI
WormBase CE10262 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65950 Hypothetical protein F41E6.10 [Caenorhabditis elegans] ref|NP_505221.1| F41E6.10 [Caenorhabditis elegans] 1.0E-33
Sequence
Target Sequence 
>C. ELEGANS:185320_AT
cctacactaaccgctcattttttgtttgctgctatgacgtttatttacattttaatatac
atttcactcttttcttatcgcacaagaaattgccatatgagaagacaggacgagaaccgc
cattgttctcacttgtagtcggtgaggatgttgatgaagatgttggaaaatcgaaaaatg
acgatgttgacggagaagagcaggttgaggaagaaggttccgacatatttcagacactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTACACTAACCGCTCATTTTTTGT 699 267 23 Antisense
ACCGCTCATTTTTTGTTTGCTGCTA 4 91 32 Antisense
GTTTGCTGCTATGACGTTTATTTAC 340 451 46 Antisense
TTAATATACATTTCACTCTTTTCTT 288 685 74 Antisense
TTTCACTCTTTTCTTATCGCACAAG 614 671 84 Antisense
ATCGCACAAGAAATTGCCATATGAG 322 37 99 Antisense
AGACAGGACGAGAACCGCCATTGTT 121 73 125 Antisense
GCCATTGTTCTCACTTGTAGTCGGT 292 281 141 Antisense
GTAGTCGGTGAGGATGTTGATGAAG 230 457 157 Antisense
GACGATGTTGACGGAGAAGAGCAGG 406 379 202 Antisense
AGGTTCCGACATATTTCAGACACTG 642 55 237 Antisense
Sequence Source Affymetrix Proprietary Database