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[185319_at]

Description Y53C10A.6 /REP_DB=WormBase Gene ID /WP=CE22374 /TR=Q9XW51 /GB=CAA22140.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      6grp_total > 87      4grp_total > 56      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 166.3
(3)
P 		99.7
(-3)
A 		106
(-2.4)
M 		112
(-1.9)
A 		67
B 95.1
(-3)
P 		99.7
(-2.4)
A 		139.3
(3)
P 		121.4
(0.6)
P 		44
C 109.4
(-3)
P 		120.6
(-2.5)
A 		247.9
(3)
P 		137.2
(-1.8)
P 		139
avr 123.6
(-1.2) 		106.7
(-3) 		164.4
(3) 		123.5
(-1.3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 98.2
(-3)
A 		140.1
(-1.1)
P 		172.9
(0.4)
P 		121.7
(-1.9)
P 		211.6
(2.2)
P 		229.4
(3)
P 		131
B 89.4
(-3)
P 		91
(-3)
P 		168.1
(-0.9)
P 		183.4
(-0.5)
P 		238.1
(1)
P 		311.3
(3)
P 		222
C 125.7
(-2.1)
P 		188.2
(-0.8)
P 		84.5
(-3)
P 		145.6
(-1.7)
P 		174.8
(-1)
P 		362
(3)
P 		278
avr 104.4
(-3) 		139.8
(-1.9) 		141.8
(-1.9) 		150.2
(-1.6) 		208.2
(0.2) 		300.9
(3) 		197
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 60.6
(3)
P 		21.7
(-2.3)
A 		27.7
(-1.5)
M 		16.4
(-3)
A 		44
B 30.3
(1.4)
P 		24.6
(-3)
A 		32.3
(3)
P 		25.9
(-2)
P 		8
C 36.2
(-1.8)
P 		34.7
(-1.9)
A 		86.4
(3)
P 		23.1
(-3)
P 		63
avr 42.4
(1.6) 		27
(-1.8) 		48.8
(3) 		21.8
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 18.1
(-3)
A 		49.8
(1.2)
P 		37.7
(-0.4)
P 		30.9
(-1.3)
P 		63.9
(3)
P 		55.9
(2)
P 		46
B 31.1
(-2.9)
P 		30.3
(-3)
P 		40.8
(-2.3)
P 		48.6
(-1.7)
P 		96.7
(1.6)
P 		116.1
(3)
P 		86
C 46.6
(-1.5)
P 		57.4
(-0.8)
P 		21.5
(-3)
P 		29.3
(-2.5)
P 		56.6
(-0.9)
P 		121.2
(3)
P 		100
avr 31.9
(-3) 		45.8
(-1.7) 		33.3
(-2.9) 		36.3
(-2.6) 		72.4
(0.7) 		97.7
(3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185319_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2077
Sequence Type Exemplar sequence
Representative Public ID Y53C10A.6 NCBI
Target Description Y53C10A.6 /REP_DB=WormBase Gene ID /WP=CE22374 /TR=Q9XW51 /GB=CAA22140.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060636(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060636 NCBI Caenorhabditis elegans Y53C10A.6 (Y53C10A.6) mRNA, complete cds. 11/11 None
SNAP00000000685 ENSEMBL cdna:SNAP chromosome:CEL140:I:12010875:12012870:-1 11/11 None
GENEFINDER00000000703 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12010875:12013119:-1 11/11 None
Y53C10A.6 ENSEMBL cdna:known chromosome:CEL140:I:12010875:12013119:-1 gene:Y53C10A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12010805-12013050(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53C10A.6
Entrez Gene 190193 Entrez gene
SwissProt Q9XW51 EMBL-EBI
WormBase CE22374 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22140 Hypothetical protein Y53C10A.6 [Caenorhabditis elegans] ref|NP_493037.1| Y53C10A.6 [Caenorhabditis elegans] 0.0
blast CAA22140 Hypothetical protein Y53C10A.6 [Caenorhabditis elegans] ref|NP_493037.1| Y53C10A.6 [Caenorhabditis elegans] 1.0E-151
blast CAA22140 Hypothetical protein Y53C10A.6 [Caenorhabditis elegans] ref|NP_493037.1| Y53C10A.6 [Caenorhabditis elegans] 1.0E-149
blast CAE71725 Hypothetical protein CBG18704 [Caenorhabditis briggsae] 4.0E-65
blast CAE71725 Hypothetical protein CBG18704 [Caenorhabditis briggsae] 8.0E-56
blast CAE71725 Hypothetical protein CBG18704 [Caenorhabditis briggsae] 2.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000000703 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:185319_AT
tcgccttctcgatcacatttttagagataaagatgataaagatctgagttttgaggagaa
gaagcttgaatatgagcagatagccacagacacctccaaagtgctggagcatctcatttc
ttggcgagagcatgtttgcaaatatatcaaagatttggaggcttttgaaactgataatct
catggatttgagtgatgagcagaaggaatttatcaacgttttgctggacaaatcgacgaa
aaccgtgccgcagattgacgcgaaaatcgagcagaaaagatcccaaatcggatacgaaga
agagcaagattttgagccattctacagagtaatgataaaagagccaaaatttcaacaaat
gggaccacttgatgctcgaaacgaaattcgtagaattttcgacgaatccaacgtgaattt
gagacgaattatcgcaagaatcggagccgataagactgaaaaagaagaaatttcgccaaa
aatgacaagaaaacgtgtctcaaatgatgtttccaacgaatcagctcgcggagcccccaa
aattgtcaaaaaattgctgaaagccgccgatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCCTTCTCGATCACATTTTTAGA 240 599 435 Antisense
TGAGCAGATAGCCACAGACACCTCC 246 569 507 Antisense
GACACCTCCAAAGTGCTGGAGCATC 40 369 523 Antisense
CTGGAGCATCTCATTTCTTGGCGAG 465 241 538 Antisense
GGAATTTATCAACGTTTTGCTGGAC 353 533 639 Antisense
AAATCGACGAAAACCGTGCCGCAGA 668 115 664 Antisense
AACCGTGCCGCAGATTGACGCGAAA 147 147 675 Antisense
AAATGGGACCACTTGATGCTCGAAA 707 119 791 Antisense
GTGTCTCAAATGATGTTTCCAACGA 327 487 929 Antisense
TTCCAACGAATCAGCTCGCGGAGCC 645 699 945 Antisense
AAAAATTGCTGAAAGCCGCCGATCA 344 129 983 Antisense
Sequence Source Affymetrix Proprietary Database