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[185318_s_at]

Description H20J04.6 /REP_DB=WormBase Gene ID /WP=CE20973 /TR=Q9N5M3 /GB=AAF39886.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 13      6grp_total > 08      4grp_total > 36      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 136.1
(-3)
M 		160
(3)
P 		145.8
(-0.6)
P 		152.5
(1.1)
A 		24
B 183
(1.7)
P 		207.6
(3)
A 		93.6
(-3)
A 		101.2
(-2.6)
A 		114
C 134.2
(-0.2)
P 		103.4
(-1.6)
A 		72.5
(-3)
A 		203.7
(3)
P 		131
avr 151.1
(2.3) 		157
(3) 		104
(-3) 		152.5
(2.5) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 176.8
(3)
P 		53.6
(-2.9)
A 		71.7
(-2)
A 		102.6
(-0.5)
A 		63
(-2.4)
A 		50.9
(-3)
A 		126
B 72
(-2.7)
P 		70
(-3)
A 		109.4
(3)
A 		83
(-1)
P 		85.1
(-0.7)
A 		91.5
(0.3)
A 		39
C 73
(1)
A 		65.1
(-1)
M 		71.8
(0.7)
A 		59.1
(-2.4)
A 		56.8
(-3)
P 		81.1
(3)
A 		24
avr 107.3
(3) 		62.9
(-3) 		84.3
(-0.1) 		81.6
(-0.5) 		68.3
(-2.3) 		74.5
(-1.4) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 49.6
(3)
M 		34.7
(-0.3)
P 		38.1
(0.5)
P 		22.3
(-3)
A 		27
B 58.4
(3)
P 		51.3
(1.8)
A 		21.7
(-3)
A 		21.6
(-3)
A 		37
C 44.4
(3)
P 		29.7
(-1.6)
A 		25.3
(-3)
A 		34.3
(-0.2)
P 		19
avr 50.8
(3) 		38.6
(0) 		28.4
(-2.4) 		26.1
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 32.6
(3)
P 		19.1
(-1)
A 		15.6
(-2)
A 		26
(1)
A 		19
(-1)
A 		12.4
(-3)
A 		20
B 25
(-1.6)
P 		23.3
(-2.4)
A 		26.6
(-0.8)
A 		22
(-3)
P 		34.6
(3)
A 		34.1
(2.8)
A 		13
C 27
(2.9)
A 		19.8
(0.1)
M 		18.3
(-0.5)
A 		11.9
(-3)
A 		18.4
(-0.5)
P 		27.2
(3)
A 		15
avr 28.2
(3) 		20.7
(-2.5) 		20.2
(-2.9) 		20
(-3) 		24
(-0.1) 		24.6
(0.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185318_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5646
Sequence Type Exemplar sequence
Representative Public ID H20J04.6 NCBI
Target Description H20J04.6 /REP_DB=WormBase Gene ID /WP=CE20973 /TR=Q9N5M3 /GB=AAF39886.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062361(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062361 NCBI Caenorhabditis elegans H20J04.6 (H20J04.6) mRNA, complete cds. 11/11 None
SNAP00000017485 ENSEMBL cdna:SNAP chromosome:CEL140:II:4323253:4323909:1 11/11 None
GENEFINDER00000017493 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4323256:4325860:1 10/11 None
H20J04.6 ENSEMBL cdna:known chromosome:CEL140:II:4323256:4324180:1 gene:H20J04.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4323254-4323908(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H20J04.6
Entrez Gene 173766 Entrez gene
SwissProt Q9N5M3 EMBL-EBI
WormBase CE20973 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252125_AT expressed protein at
CANINE_2:CFAAFFX.18931.1.S1_AT similar to CG8372-PA, isoform A cfa
DROSOPHILA_2:1629018_A_AT dm
DROSGENOME1:141814_AT dm
CHICKEN:GGAAFFX.621.1.S1_AT similar to hypothetical protein DKFZp564D0478 gga
HG-U133_PLUS_2:221512_AT chromosome 1 open reading frame 160 hs
HG-U133A_2:221512_AT chromosome 1 open reading frame 160 hs
HG-U133A:221512_AT chromosome 1 open reading frame 160 hs
HU35KSUBA:RC_AA446968_AT chromosome 1 open reading frame 160 hs
U133_X3P:G12052889_3P_S_AT chromosome 1 open reading frame 160 hs
U133_X3P:G12052889_3P_AT chromosome 1 open reading frame 160 hs
U133_X3P:221512_3P_AT chromosome 1 open reading frame 160 hs
HG-U133A_2:52078_AT chromosome 1 open reading frame 160 hs
HG-U133_PLUS_2:52078_AT chromosome 1 open reading frame 160 hs
HG-U133A:52078_AT chromosome 1 open reading frame 160 hs
HG-U95B:52078_AT chromosome 1 open reading frame 160 hs
HG-U95C:57275_AT chromosome 1 open reading frame 160 hs
U133_X3P:HS.14376.4.A1_3P_X_AT Chromosome 1 open reading frame 160 hs
HG-U95E:83151_AT Chromosome 1 open reading frame 160 hs
MU11KSUBA:AA139055_AT DNA segment, Chr 4, ERATO Doi 196, expressed mm
MG-U74AV2:96014_AT DNA segment, Chr 4, ERATO Doi 196, expressed mm
MG-U74AV2:161715_F_AT DNA segment, Chr 4, ERATO Doi 196, expressed mm
MG-U74BV2:164954_R_AT DNA segment, Chr 4, ERATO Doi 196, expressed mm
MG-U74BV2:164975_I_AT DNA segment, Chr 4, ERATO Doi 196, expressed mm
MG-U74BV2:164622_F_AT DNA segment, Chr 4, ERATO Doi 196, expressed mm
MG-U74CV2:169783_AT DNA segment, Chr 4, ERATO Doi 196, expressed mm
MOE430A:1452686_S_AT DNA segment, Chr 4, ERATO Doi 196, expressed mm
MOUSE430A_2:1452686_S_AT DNA segment, Chr 4, ERATO Doi 196, expressed mm
MOUSE430_2:1452686_S_AT DNA segment, Chr 4, ERATO Doi 196, expressed mm
MU19KSUBA:TC14673_S_AT DNA segment, Chr 4, ERATO Doi 196, expressed, mRNA (cDNA clone MGC:47183 IMAGE:5356647) mm
MU19KSUBB:TC31677_AT DNA segment, Chr 4, ERATO Doi 196, expressed, mRNA (cDNA clone MGC:47183 IMAGE:5356647) mm
MU19KSUBB:TC33960_AT DNA segment, Chr 4, ERATO Doi 196, expressed, mRNA (cDNA clone MGC:47183 IMAGE:5356647) mm
RG-U34C:RC_AI102387_AT similar to hypothetical protein DKFZp564D0478 (predicted) rn
RAE230A:1376833_AT similar to hypothetical protein DKFZp564D0478 (predicted) rn
RAT230_2:1376833_AT similar to hypothetical protein DKFZp564D0478 (predicted) rn
RAE230B:1397041_AT Similar to hypothetical protein DKFZp564D0478 (predicted) rn
RAT230_2:1397041_AT Similar to hypothetical protein DKFZp564D0478 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK31542 Spliceosome-associated protein protein 1 [Caenorhabditis elegans] ref|NP_494763.1| H20J04.8 [Caenorhabditis elegans] sp|Q9BLB6|RU2A_CAEEL Probable U2 small nuclear ribonucleoprotein A' (U2 snRNP-A') 1.0E-133
blast CAE60126 Hypothetical protein CBG03669 [Caenorhabditis briggsae] 1.0E-116
blast AAF39886 Hypothetical protein H20J04.6 [Caenorhabditis elegans] ref|NP_494762.1| H20J04.6 [Caenorhabditis elegans] 1.0E-100
blast AAF39886 Hypothetical protein H20J04.6 [Caenorhabditis elegans] ref|NP_494762.1| H20J04.6 [Caenorhabditis elegans] 9.0E-92
blast CAE60127 Hypothetical protein CBG03670 [Caenorhabditis briggsae] 3.0E-80
blast CAG00029 unnamed protein product [Tetraodon nigroviridis] 1.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR008496 EMBL-EBI Protein of unknown function DUF778 5.5E-126
Pfam IPR008496 EMBL-EBI Protein of unknown function DUF778 4.9E-115
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.045
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.05
Pfam IPR008496 EMBL-EBI Protein of unknown function DUF778 5.5E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494762.1 2 15-37,147-166
H20J04.6 2 15-37,147-166
SNAP00000017485 2 20-42,148-167
GENEFINDER00000017493 1 17-39
Sequence
Target Sequence 
>C. ELEGANS:185318_S_AT
gaccgtgacatctgcccagaaaacaatcggtatccatactgcattgtttggactccgatt
ccatgcctgacttggtttttcccattcatcggccacatgggaatcgcgaatagccgtgga
atcattcgagactttgctgggagctattatgtggcggaagacgacatgggattcggctgg
cccacaagatactggcaattaggcccggaaaaggtggaaggtggcgcggaagtcttcgat
agagcagttcaagatgcttccgacacgtataaaactagaactcacaatctcatctgcgat
aattgtcactcgcacgtggctctggctctcaacaaaatgcgctacgatgagcgcgaggac
tggaatatgatcaatttggcgtggtattcactgacaaaaggaagcttcgttcgtaacacg
gatatgctcgctcaataccttccattcgttataat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCGTGACATCTGCCCAGAAAACA 107 383 25 Antisense
CATACTGCATTGTTTGGACTCCGAT 556 213 59 Antisense
TTTTCCCATTCATCGGCCACATGGG 151 675 101 Antisense
GGGAATCGCGAATAGCCGTGGAATC 435 493 123 Antisense
ATCATTCGAGACTTTGCTGGGAGCT 252 31 145 Antisense
GGATTCGGCTGGCCCACAAGATACT 463 507 193 Antisense
CAGTTCAAGATGCTTCCGACACGTA 499 205 269 Antisense
GTGGCTCTGGCTCTCAACAAAATGC 486 491 340 Antisense
AGGAAGCTTCGTTCGTAACACGGAT 506 1 423 Antisense
TAACACGGATATGCTCGCTCAATAC 18 641 438 Antisense
CTCAATACCTTCCATTCGTTATAAT 225 227 455 Antisense
Sequence Source Affymetrix Proprietary Database