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[185317_at]

Description C24H12.1 /REP_DB=WormBase Gene ID /WP=CE08356 /TR=O17165 /GB=AAB71199.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 25.7
(3)
A 		20.8
(1.1)
A 		18.5
(0.2)
A 		10.3
(-3)
A 		15
B 39
(3)
A 		27.7
(0.7)
A 		9.4
(-3)
A 		37
(2.6)
A 		30
C 8.5
(-2.9)
A 		19
(-0.6)
A 		7.9
(-3)
A 		36.2
(3)
A 		28
avr 24.4
(1.7) 		22.5
(1) 		11.9
(-3) 		27.8
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 14.9
(-1.2)
A 		15.6
(-1.1)
A 		40.9
(3)
A 		5
(-2.9)
A 		4.1
(-3)
A 		14.5
(-1.3)
A 		37
B 6
(-2.2)
A 		32.2
(3)
A 		24.9
(1.6)
A 		6.2
(-2.1)
A 		22.3
(1)
A 		1.9
(-3)
A 		30
C 32.2
(0.8)
A 		2.1
(-3)
A 		49.4
(3)
A 		20.2
(-0.7)
A 		4.3
(-2.7)
A 		20.5
(-0.7)
A 		47
avr 17.7
(-1.4) 		16.6
(-1.6) 		38.4
(3) 		10.5
(-2.9) 		10.2
(-3) 		12.3
(-2.6) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 9.4
(3)
A 		4.5
(-0.7)
A 		4.8
(-0.5)
A 		1.5
(-3)
A 		8
B 12.4
(3)
A 		6.8
(-0.3)
A 		2.2
(-3)
A 		7.9
(0.4)
A 		10
C 2.8
(-3)
A 		5.5
(1.9)
A 		2.8
(-3)
A 		6.1
(3)
A 		3
avr 8.2
(3) 		5.6
(-0.2) 		3.3
(-3) 		5.2
(-0.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.7
(-1.8)
A 		5.6
(0.4)
A 		8.9
(3)
A 		1.3
(-2.9)
A 		1.2
(-3)
A 		3.5
(-1.2)
A 		8
B 2.1
(-2.2)
A 		10.7
(3)
A 		6
(0.2)
A 		1.6
(-2.5)
A 		9.1
(2)
A 		0.7
(-3)
A 		10
C 11.9
(2.7)
A 		0.6
(-3)
A 		12.6
(3)
A 		4.1
(-1.3)
A 		1.4
(-2.6)
A 		6.9
(0.2)
A 		12
avr 5.6
(-0.1) 		5.6
(-0.1) 		9.2
(3) 		2.3
(-3) 		3.9
(-1.6) 		3.7
(-1.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185317_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5054
Sequence Type Exemplar sequence
Representative Public ID C24H12.1 NCBI
Target Description C24H12.1 /REP_DB=WormBase Gene ID /WP=CE08356 /TR=O17165 /GB=AAB71199.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061335(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061335 NCBI Caenorhabditis elegans C24H12.1 (C24H12.1) mRNA, complete cds. 11/11 None
GENEFINDER00000023834 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:441541:446917:1 11/11 None
C24H12.1 ENSEMBL cdna:known chromosome:CEL140:II:441541:446927:1 gene:C24H12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023833 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:441540-446927(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24H12.1
Entrez Gene 182866 Entrez gene
SwissProt O17165 EMBL-EBI
WormBase CE08356 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71199 Hypothetical protein C24H12.1 [Caenorhabditis elegans] ref|NP_493736.1| C24H12.1 [Caenorhabditis elegans] 0.0
blast NP_493753 T27A1.2 [Caenorhabditis elegans] gb|AAB71043.2| Hypothetical protein T27A1.2 [Caenorhabditis elegans] 1.0E-104
blast NP_493753 T27A1.2 [Caenorhabditis elegans] gb|AAB71043.2| Hypothetical protein T27A1.2 [Caenorhabditis elegans] 1.0E-103
blast AAB71207 Hypothetical protein C24H12.11 [Caenorhabditis elegans] ref|NP_493734.1| C24H12.11 [Caenorhabditis elegans] 8.0E-93
blast AAB71207 Hypothetical protein C24H12.11 [Caenorhabditis elegans] ref|NP_493734.1| C24H12.11 [Caenorhabditis elegans] 4.0E-92
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493736.1 1 5-22
C24H12.1 1 5-22
GENEFINDER00000023834 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:185317_AT
agaaaccagttgccatgtctcttgttttacacgtcacaacatttgacagacctgttgaat
ttgttgcacgattctttttcaatcaaaaatgtcgatttagtaattgaccgtgatcgaatg
ttcggggaatatcaatccactctgagtcacccattatttcggaaatgccattttgtcaaa
cttcttggaaaacgactatacgttagcaatgaggatatgcattttatattaaagaatttc
gatttgaaatacggatttctgactcgctgtttacaaaggcgacagaaaactgtggttaaa
tattccccgattggagttgaatggagacacacagttgacattggaggatttaaagatgat
gaacagcgaaaaaatgcgatttttcaatttatttggactgatgacttattgaatgggttg
ccacattcaaagtggaatccgaaacgtcgagaaagaatcttctacgacgatattgaattc
gtggattgttcaaaaggacgagatattgaacgaagtgatggtctactcgcaactatttta
tgcacatccaataccatgtacttgctcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAACCAGTTGCCATGTCTCTTGT 92 73 1132 Antisense
CATGTCTCTTGTTTTACACGTCACA 673 209 1145 Antisense
ATTTGTTGCACGATTCTTTTTCAAT 127 19 1190 Antisense
GTAATTGACCGTGATCGAATGTTCG 151 461 1231 Antisense
GTTCGGGGAATATCAATCCACTCTG 615 439 1251 Antisense
AATCCACTCTGAGTCACCCATTATT 523 167 1265 Antisense
TTTCTGACTCGCTGTTTACAAAGGC 329 671 1387 Antisense
ACTGTGGTTAAATATTCCCCGATTG 261 95 1420 Antisense
GGAGACACACAGTTGACATTGGAGG 305 519 1454 Antisense
GATGACTTATTGAATGGGTTGCCAC 111 413 1531 Antisense
CATCCAATACCATGTACTTGCTCGT 205 211 1676 Antisense
Sequence Source Affymetrix Proprietary Database