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[185316_at]

Description F49D11.3 /REP_DB=WormBase Gene ID /WP=CE17077 /TR=O44724 /GB=AAB96709.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 63      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 33.5
(0.1)
A 		11.7
(-3)
A 		54.1
(3)
A 		26.1
(-1)
A 		42
B 27.3
(3)
A 		17.9
(-0.1)
A 		9.3
(-3)
A 		26.3
(2.7)
A 		18
C 2.5
(-2.8)
A 		10.5
(1.5)
A 		13.3
(3)
A 		2.1
(-3)
A 		11
avr 21.1
(0.8) 		13.4
(-3) 		25.6
(3) 		18.2
(-0.6) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 6.7
(-2.6)
A 		30.6
(0.6)
A 		10.5
(-2.1)
A 		17.7
(-1.1)
A 		48.4
(3)
A 		3.7
(-3)
A 		45
B 37.7
(0.6)
A 		13.5
(-2.3)
A 		28.4
(-0.5)
A 		8.9
(-2.8)
A 		58.2
(3)
A 		7.3
(-3)
A 		51
C 7.4
(-2.7)
A 		16.5
(-1.2)
A 		42.8
(3)
A 		5.4
(-3)
A 		34
(1.6)
A 		8
(-2.6)
A 		37
avr 17.3
(-1.4) 		20.2
(-0.9) 		27.2
(0.1) 		10.7
(-2.3) 		46.9
(3) 		6.3
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 12.2
(2)
A 		2.5
(-3)
A 		14.1
(3)
A 		3.8
(-2.3)
A 		12
B 8.7
(3)
A 		4.4
(-0.9)
A 		2.1
(-3)
A 		5.6
(0.2)
A 		7
C 0.8
(-2.3)
A 		3
(0.7)
A 		4.7
(3)
A 		0.3
(-3)
A 		4
avr 7.2
(3) 		3.3
(-2.9) 		7
(2.7) 		3.2
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.2
(-2.9)
A 		10.9
(1.4)
A 		2.3
(-2.4)
A 		4.5
(-1.4)
A 		14.6
(3)
A 		0.9
(-3)
A 		14
B 13.1
(0)
A 		4.5
(-2.4)
A 		6.9
(-1.7)
A 		2.4
(-3)
A 		23.7
(3)
A 		2.7
(-2.9)
A 		21
C 2.8
(-2)
A 		5
(-0.6)
A 		10.9
(2.9)
A 		1.1
(-3)
A 		11
(3)
A 		2.7
(-2)
A 		10
avr 5.7
(-1.5) 		6.8
(-1) 		6.7
(-1.1) 		2.7
(-2.7) 		16.4
(3) 		2.1
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185316_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2080
Sequence Type Exemplar sequence
Representative Public ID F49D11.3 NCBI
Target Description F49D11.3 /REP_DB=WormBase Gene ID /WP=CE17077 /TR=O44724 /GB=AAB96709.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060445(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060445 NCBI Caenorhabditis elegans F49D11.3 (F49D11.3) mRNA, complete cds. 11/11 None
GENEFINDER00000015060 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10925189:10927217:1 11/11 None
SNAP00000015039 ENSEMBL cdna:SNAP chromosome:CEL140:I:10926013:10927217:1 11/11 None
F49D11.3 ENSEMBL cdna:known chromosome:CEL140:I:10925189:10927217:1 gene:F49D11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10925119-10927148(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49D11.3
Entrez Gene 186032 Entrez gene
SwissProt O44724 EMBL-EBI
WormBase CE17077 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96709 Hypothetical protein F49D11.3 [Caenorhabditis elegans] ref|NP_492846.1| F49D11.3 [Caenorhabditis elegans] 1.0E-166
blast AAB96709 Hypothetical protein F49D11.3 [Caenorhabditis elegans] ref|NP_492846.1| F49D11.3 [Caenorhabditis elegans] 1.0E-139
blast AAB96712 Hypothetical protein F49D11.6 [Caenorhabditis elegans] ref|NP_492843.1| F49D11.6 [Caenorhabditis elegans] 1.0E-114
blast AAB96712 Hypothetical protein F49D11.6 [Caenorhabditis elegans] ref|NP_492843.1| F49D11.6 [Caenorhabditis elegans] 1.0E-103
blast CAE56341 Hypothetical protein CBG24013 [Caenorhabditis briggsae] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492846.1 1 7-26
F49D11.3 1 7-26
GENEFINDER00000015060 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:185316_AT
gaaaacgacgacttcatttatcccacggaatctctggaaaatgatatcgaaactgcaaga
ttcgcgttcattcgtgacccgatccaaagatttgtgtcgctgtatctcaacaagtgtgta
cgagagaaatcgtgctataattgcggagacgacatgagatgtacagtttggaaaatctat
gaaggattgaaaaaaattcaagatcattgggatgggcactcagagattgggtttatggaa
ggacacgccgcaccgttgtcttggaactgcgatttcgacaaggatctcccaaaatggcag
ttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACGACGACTTCATTTATCCCA 27 355 349 Antisense
ATTTATCCCACGGAATCTCTGGAAA 558 13 364 Antisense
GAAACTGCAAGATTCGCGTTCATTC 478 357 397 Antisense
TTCATTCGTGACCCGATCCAAAGAT 421 685 415 Antisense
GTGTCGCTGTATCTCAACAAGTGTG 587 487 442 Antisense
GAAATCGTGCTATAATTGCGGAGAC 2 363 474 Antisense
ATTGGGATGGGCACTCAGAGATTGG 204 3 554 Antisense
GGGTTTATGGAAGGACACGCCGCAC 259 495 577 Antisense
GCACCGTTGTCTTGGAACTGCGATT 97 313 598 Antisense
ACTGCGATTTCGACAAGGATCTCCC 423 97 614 Antisense
AGGATCTCCCAAAATGGCAGTTGTT 406 57 629 Antisense
Sequence Source Affymetrix Proprietary Database