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[185314_s_at]

Description Y52B11A.8 /REP_DB=WormBase Gene ID /WP=CE20296 /TR=Q9U256 /GB=CAB63390.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 86      4grp_high_8_8 > 37      6grp_total > 78      4grp_total > 41      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 147.7
(-3)
M 		312
(3)
P 		210.5
(-0.7)
P 		293.5
(2.3)
M 		164
B 210.7
(-1.8)
P 		268.9
(1.2)
P 		303.5
(3)
P 		187.6
(-3)
P 		116
C 90.6
(-3)
P 		289.9
(3)
M 		216
(0.8)
P 		222.9
(1)
P 		199
avr 149.7
(-3) 		290.3
(3) 		243.3
(1) 		234.7
(0.6) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 664
1 2 3 4 5 6 range
A 153.1
(-3)
P 		300.3
(-1.1)
P 		217.2
(-2.2)
P 		243.7
(-1.8)
P 		377.8
(-0)
P 		608.2
(3)
P 		455
B 108.2
(-3)
P 		263
(-1.6)
P 		269.9
(-1.5)
P 		182.3
(-2.3)
P 		469.1
(0.3)
P 		771.8
(3)
P 		664
C 185
(-3)
A 		399.8
(-0.1)
P 		220.5
(-2.5)
P 		214.4
(-2.6)
P 		360
(-0.7)
P 		632.9
(3)
P 		448
avr 148.8
(-3) 		321
(-1) 		235.9
(-2) 		213.5
(-2.3) 		402.3
(-0.1) 		671
(3) 		522
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 53.8
(-0.4)
M 		67.7
(3)
P 		55
(-0.1)
P 		43
(-3)
M 		25
B 67.2
(2.4)
P 		66.4
(2.2)
P 		70.3
(3)
P 		40
(-3)
P 		30
C 30
(-3)
P 		83.4
(3)
M 		75.3
(2.1)
P 		37.6
(-2.1)
P 		53
avr 50.3
(-1.1) 		72.5
(3) 		66.9
(2) 		40.2
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 28.2
(-3)
P 		106.8
(0.9)
P 		47.3
(-2)
P 		61.8
(-1.3)
P 		114
(1.3)
P 		148.1
(3)
P 		120
B 37.6
(-3)
P 		87.5
(-1.8)
P 		65.5
(-2.3)
P 		48.3
(-2.7)
P 		190.6
(0.7)
P 		287.8
(3)
P 		250
C 68.6
(-2.1)
A 		122
(-0.2)
P 		56.1
(-2.5)
P 		43.1
(-3)
P 		116.5
(-0.4)
P 		211.9
(3)
P 		169
avr 44.8
(-3) 		105.4
(-0.9) 		56.3
(-2.6) 		51.1
(-2.8) 		140.4
(0.4) 		215.9
(3) 		171
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185314_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1694
Sequence Type Exemplar sequence
Representative Public ID Y52B11A.8 NCBI
Target Description Y52B11A.8 /REP_DB=WormBase Gene ID /WP=CE20296 /TR=Q9U256 /GB=CAB63390.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060458(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060458 NCBI Caenorhabditis elegans Y52B11A.8 (Y52B11A.8) mRNA, complete cds. 11/11 A 
SNAP00000015594 ENSEMBL cdna:SNAP chromosome:CEL140:I:11038766:11060523:1 10/11 None
GENEFINDER00000015606 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11040467:11041294:1 10/11 None
Y52B11A.8 ENSEMBL cdna:known chromosome:CEL140:I:11040466:11042178:1 gene:Y52B11A.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11040397-11042010(+) 99.62 100.0
Public Domain and Genome References
Gene Title
Ensembl Y52B11A.8
Entrez Gene 173004 Entrez gene
SwissProt Q9U256 EMBL-EBI
WormBase CE20296 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4623 phospholipase A2 activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63391 Hypothetical protein Y52B11A.10 [Caenorhabditis elegans] ref|NP_492861.1| Y52B11A.10 [Caenorhabditis elegans] 0.0
blast CAE71829 Hypothetical protein CBG18870 [Caenorhabditis briggsae] 0.0
blast CAB63390 Hypothetical protein Y52B11A.8 [Caenorhabditis elegans] ref|NP_492859.1| Y52B11A.8 [Caenorhabditis elegans] 1.0E-85
blast CAB63390 Hypothetical protein Y52B11A.8 [Caenorhabditis elegans] ref|NP_492859.1| Y52B11A.8 [Caenorhabditis elegans] 2.0E-69
blast CAE56164 Hypothetical protein CBG23784 [Caenorhabditis briggsae] 1.0E-61
blast CAB63390 Hypothetical protein Y52B11A.8 [Caenorhabditis elegans] ref|NP_492859.1| Y52B11A.8 [Caenorhabditis elegans] 4.0E-39
blast CAE56164 Hypothetical protein CBG23784 [Caenorhabditis briggsae] 3.0E-32
blast AAA98725 Hypothetical protein B0478.3 [Caenorhabditis elegans] ref|NP_501074.1| B0478.3 [Caenorhabditis elegans] 5.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR003890 EMBL-EBI Initiation factor eIF-4 gamma, middle 1.6E-27
Pfam IPR003891 EMBL-EBI Initiation factor eIF-4 gamma, MA3 8.3E-35
Sequence
Target Sequence 
>C. ELEGANS:185314_S_AT
ggctgctacgaagcacagtcgggacaaaagttctgcgatgacacgttttgctcgtgtctt
gagcgccgttctcgaagctccaaatcatgccacgacgagtcggctccactattctgcgat
ctcgtccgaacctttggtgacggtgcctacgaagcttctggtccaaacgcctcgactacc
gaagagagtcctgccgagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGCTACGAAGCACAGTCGGGAC 650 539 274 Antisense
GCACAGTCGGGACAAAAGTTCTGCG 4 317 286 Antisense
AGTTCTGCGATGACACGTTTTGCTC 185 65 302 Antisense
ACGTTTTGCTCGTGTCTTGAGCGCC 217 95 316 Antisense
CCGTTCTCGAAGCTCCAAATCATGC 108 265 339 Antisense
AAGCTCCAAATCATGCCACGACGAG 106 151 348 Antisense
AAATCATGCCACGACGAGTCGGCTC 58 117 355 Antisense
GATCTCGTCCGAACCTTTGGTGACG 578 417 391 Antisense
TTTGGTGACGGTGCCTACGAAGCTT 3 663 406 Antisense
TACGAAGCTTCTGGTCCAAACGCCT 226 649 421 Antisense
CTACCGAAGAGAGTCCTGCCGAGAA 64 225 449 Antisense
Sequence Source Affymetrix Proprietary Database