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[185311_at] 7TM chemoreceptor, srx family

Description K09D9.10 /REP_DB=WormBase Gene ID /WP=CE21064 /TR=Q9N5J0 /GB=AAF39928.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 01      6grp_cgc > 44      6grp_cgc_sub > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 31.6
(-2.4)
A 		25.3
(-3)
A 		51.6
(-0.3)
A 		84.2
(3)
P 		59
B 55
(-0.4)
A 		47.1
(-1.5)
A 		36.8
(-3)
A 		79.3
(3)
P 		43
C 32.1
(-2.1)
P 		20.9
(-3)
A 		31.1
(-2.2)
A 		93.7
(3)
P 		73
avr 39.6
(-2.1) 		31.1
(-3) 		39.8
(-2) 		85.7
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 20.1
(-0.3)
A 		17.6
(-0.7)
A 		44.1
(3)
P 		5.6
(-2.4)
A 		1.1
(-3)
A 		12.7
(-1.4)
A 		43
B 20.3
(-0.5)
A 		36.4
(1.7)
P 		46.3
(3)
A 		2
(-3)
A 		24.7
(0.1)
A 		33.5
(1.3)
A 		44
C 25.4
(-0.3)
A 		52.3
(3)
A 		4.1
(-3)
A 		8.6
(-2.4)
A 		28.5
(0)
A 		13.5
(-1.8)
A 		48
avr 21.9
(0.3) 		35.4
(3) 		31.5
(2.2) 		5.4
(-3) 		18.1
(-0.5) 		19.9
(-0.1) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11.5
(1.5)
A 		5.5
(-3)
A 		13.5
(3)
A 		12.3
(2.1)
P 		8
B 17.5
(3)
A 		11.6
(-0.9)
A 		8.5
(-3)
A 		16.9
(2.6)
P 		9
C 10.6
(-0.2)
P 		6
(-3)
A 		10.8
(-0.1)
A 		15.8
(3)
P 		10
avr 13.2
(1.5) 		7.7
(-3) 		10.9
(-0.4) 		15
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.7
(-0.8)
A 		6.3
(0.9)
A 		9.6
(3)
P 		1.4
(-2.3)
A 		0.3
(-3)
A 		3.1
(-1.2)
A 		9
B 7.1
(0.3)
A 		12.1
(2.8)
P 		11.2
(2.4)
A 		0.5
(-3)
A 		10
(1.8)
A 		12.5
(3)
A 		12
C 9.4
(0.3)
A 		16
(3)
A 		1.1
(-3)
A 		1.7
(-2.8)
A 		9.2
(0.3)
A 		4.5
(-1.6)
A 		15
avr 6.7
(0.2) 		11.5
(3) 		7.3
(0.6) 		1.2
(-3) 		6.5
(0.1) 		6.7
(0.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185311_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15117
Sequence Type Exemplar sequence
Representative Public ID K09D9.10 NCBI
Target Description K09D9.10 /REP_DB=WormBase Gene ID /WP=CE21064 /TR=Q9N5J0 /GB=AAF39928.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071713(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071713 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-62) (srx-62) mRNA, complete cds. 11/11 None
SNAP00000015704 ENSEMBL cdna:SNAP chromosome:CEL140:V:3994593:3997620:-1 11/11 None
GENEFINDER00000015714 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3991051:3995751:-1 10/11 None
K09D9.10 ENSEMBL cdna:known chromosome:CEL140:V:3994593:3995751:-1 gene:K09D9.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3994592-3995751(-) 97.45 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-62
Ensembl K09D9.10
Entrez Gene 187212 Entrez gene
SwissProt Q9N5J0 EMBL-EBI
WormBase CE21064 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39928 Serpentine receptor, class x protein 62 [Caenorhabditis elegans] ref|NP_504114.1| Serpentine Receptor, class X family member (srx-62) [Caenorhabditis elegans] 1.0E-165
blast AAF39928 Serpentine receptor, class x protein 62 [Caenorhabditis elegans] ref|NP_504114.1| Serpentine Receptor, class X family member (srx-62) [Caenorhabditis elegans] 1.0E-155
blast AAF39928 Serpentine receptor, class x protein 62 [Caenorhabditis elegans] ref|NP_504114.1| Serpentine Receptor, class X family member (srx-62) [Caenorhabditis elegans] 1.0E-154
blast AAF39927 Hypothetical protein K09D9.9 [Caenorhabditis elegans] ref|NP_504113.1| K09D9.9 [Caenorhabditis elegans] 1.0E-119
blast AAB94249 Serpentine receptor, class x protein 64 [Caenorhabditis elegans] ref|NP_504089.2| Serpentine Receptor, class X family member (srx-64) [Caenorhabditis elegans] 1.0E-114
blast AAB94249 Serpentine receptor, class x protein 64 [Caenorhabditis elegans] ref|NP_504089.2| Serpentine Receptor, class X family member (srx-64) [Caenorhabditis elegans] 1.0E-113
blast AAB94249 Serpentine receptor, class x protein 64 [Caenorhabditis elegans] ref|NP_504089.2| Serpentine Receptor, class X family member (srx-64) [Caenorhabditis elegans] 1.0E-110
blast CAE57775 Hypothetical protein CBG00797 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR001357 EMBL-EBI BRCT 5.6E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504114.1 6 12-34,84-106,127-149,169-191,230-247,252-274
K09D9.10 6 12-34,84-106,127-149,169-191,230-247,252-274
SNAP00000015704 8 100-119,139-161,173-195,215-237,257-279,299-321,360-377,382-404
GENEFINDER00000015714 5 12-34,84-106,127-149,169-191,230-247
Sequence
Target Sequence 
>C. ELEGANS:185311_AT
agctctccgtaatgattcacctagcaatatcactcaacagattctgcgcggtctggattc
cttatcaatatcataatattttcaatgagaaaaactcaaaaattttaataattttaattt
ggttatttactgggtcagtggccatatacctttatgaaattttatgccatatctactacg
aagacaagtcggattttctcacattcaccgattctaagctgtgtgcaaacattggctggt
atggagattttgtcaaaaacgcgtgtattgttgcagtaataatgctcattgatatattaa
cagttattaaagtcagacgaatgtctagaaagatctccgtaaatataactgaacaggcgc
aaaacaaattgtcctctagagaaatgcgatttctcaagcagacagtgacacaaggctccg
tgttcttgcttgagcttctcacctacttttttattccccaatatttttccaacaagtgga
tcgtgttttttggcacgtcatttgcctgggtagctgtgcacgcagtggatggattggtgg
ttgtaatatttaatccagaagttcggaagttcctgttgtgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTCTCCGTAATGATTCACCTAGC 685 79 287 Antisense
TTCACCTAGCAATATCACTCAACAG 365 687 302 Antisense
CACTCAACAGATTCTGCGCGGTCTG 496 197 317 Antisense
CGCGGTCTGGATTCCTTATCAATAT 152 255 333 Antisense
ACTGGGTCAGTGGCCATATACCTTT 499 97 415 Antisense
GACAAGTCGGATTTTCTCACATTCA 216 365 469 Antisense
TCTCACATTCACCGATTCTAAGCTG 383 613 483 Antisense
AGTGACACAAGGCTCCGTGTTCTTG 662 57 690 Antisense
TATTCCCCAATATTTTTCCAACAAG 674 663 738 Antisense
CTGGGTAGCTGTGCACGCAGTGGAT 63 241 792 Antisense
GAAGTTCGGAAGTTCCTGTTGTGCA 466 337 844 Antisense
Sequence Source Affymetrix Proprietary Database