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[185310_at]

Description H20J04.2 /REP_DB=WormBase Gene ID /WP=CE27187 /TR=Q9N5L9 /GB=AAF39888.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      6grp_highest_nonorm > 91      6grp_total > 48      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 321.5
(3)
P 		112.9
(-3)
M 		154.4
(-1.8)
P 		244.6
(0.8)
P 		209
B 290
(3)
P 		172.4
(-3)
A 		196
(-1.8)
P 		237.9
(0.3)
P 		118
C 286.5
(3)
P 		139.3
(-3)
A 		215.2
(0.1)
P 		226.3
(0.5)
P 		147
avr 299.3
(3) 		141.5
(-3) 		188.5
(-1.2) 		236.3
(0.6) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 185.4
(-1.7)
P 		304.9
(3)
P 		151.6
(-3)
P 		208
(-0.8)
P 		226.2
(-0.1)
P 		300.8
(2.8)
P 		153
B 194.3
(0.9)
P 		203.4
(1.4)
P 		122.4
(-3)
P 		215.9
(2.1)
P 		180.9
(0.2)
P 		232.9
(3)
P 		111
C 286.8
(3)
P 		193.7
(-2)
P 		242.3
(0.6)
P 		175.2
(-3)
P 		186.6
(-2.4)
P 		204.9
(-1.4)
P 		112
avr 222.2
(1.1) 		234
(2) 		172.1
(-3) 		199.7
(-0.8) 		197.9
(-0.9) 		246.2
(3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 117.1
(3)
P 		24.5
(-3)
M 		40.4
(-2)
P 		35.8
(-2.3)
P 		93
B 92.5
(3)
P 		42.6
(-3)
A 		45.4
(-2.7)
P 		50.7
(-2)
P 		50
C 94.8
(3)
P 		40
(-2.8)
A 		75
(0.9)
P 		38.2
(-3)
P 		57
avr 101.5
(3) 		35.7
(-3) 		53.6
(-1.4) 		41.6
(-2.5) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 34.2
(-2.9)
P 		108.4
(3)
P 		33
(-3)
P 		52.7
(-1.4)
P 		68.3
(-0.2)
P 		73.2
(0.2)
P 		75
B 67.6
(1)
P 		67.7
(1)
P 		29.7
(-3)
P 		57.2
(-0.1)
P 		73.5
(1.6)
P 		86.8
(3)
P 		57
C 106.3
(3)
P 		59.1
(-1)
P 		61.7
(-0.8)
P 		35.2
(-3)
P 		60.4
(-0.9)
P 		68.6
(-0.2)
P 		71
avr 69.4
(1.5) 		78.4
(3) 		41.5
(-3) 		48.4
(-1.9) 		67.4
(1.2) 		76.2
(2.6) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185310_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4448
Sequence Type Exemplar sequence
Representative Public ID H20J04.2 NCBI
Target Description H20J04.2 /REP_DB=WormBase Gene ID /WP=CE27187 /TR=Q9N5L9 /GB=AAF39888.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062366(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062366 NCBI Caenorhabditis elegans H20J04.2 (H20J04.2) mRNA, complete cds. 11/11 None
SNAP00000017488 ENSEMBL cdna:SNAP chromosome:CEL140:II:4329025:4350547:1 11/11 None
GENEFINDER00000017492 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4340145:4350547:1 11/11 None
H20J04.2 ENSEMBL cdna:known chromosome:CEL140:II:4340145:4351060:1 gene:H20J04.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4340143-4350546(+) 99.59 100.0
Public Domain and Genome References
Gene Title
Ensembl H20J04.2
Entrez Gene 173769 Entrez gene
SwissProt Q9N5L9 EMBL-EBI
WormBase CE27187 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588596_AT similar to bromodomain adjacent to zinc finger domain, 1A isoform a cfa
CANINE_2:CFA.15498.1.A1_S_AT similar to bromodomain adjacent to zinc finger domain, 1A isoform a cfa
CANINE_2:CFAAFFX.20598.1.S1_AT similar to bromodomain adjacent to zinc finger domain, 1A isoform a cfa
CANINE_2:CFAAFFX.20602.1.S1_S_AT similar to bromodomain adjacent to zinc finger domain, 1A isoform a cfa
DROSOPHILA_2:1637574_AT ATP-dependent chromatin assembly factor large subunit dm
DROSGENOME1:153646_AT ATP-dependent chromatin assembly factor large subunit dm
CHICKEN:GGA.19082.1.S1_S_AT bromodomain adjacent to zinc finger domain, 1A gga
CHICKEN:GGAAFFX.21668.1.S1_S_AT bromodomain adjacent to zinc finger domain, 1A gga
CHICKEN:GGAAFFX.23093.1.S1_S_AT bromodomain adjacent to zinc finger domain, 1A gga
HG-U133_PLUS_2:217986_S_AT bromodomain adjacent to zinc finger domain, 1A hs
HG-U133A:217986_S_AT bromodomain adjacent to zinc finger domain, 1A hs
HG-U133A_2:217986_S_AT bromodomain adjacent to zinc finger domain, 1A hs
HU35KSUBA:RC_AA521121_AT bromodomain adjacent to zinc finger domain, 1A hs
HU35KSUBB:RC_W60439_AT bromodomain adjacent to zinc finger domain, 1A hs
HU35KSUBD:RC_H80325_AT bromodomain adjacent to zinc finger domain, 1A hs
U133_X3P:G7304918_3P_A_AT bromodomain adjacent to zinc finger domain, 1A hs
U133_X3P:HS.8858.0.A1_3P_A_AT bromodomain adjacent to zinc finger domain, 1A hs
HG-U133A_2:217985_S_AT bromodomain adjacent to zinc finger domain, 1A hs
HG-FOCUS:217985_S_AT bromodomain adjacent to zinc finger domain, 1A hs
HG-U133_PLUS_2:217985_S_AT bromodomain adjacent to zinc finger domain, 1A hs
HG-U133A:217985_S_AT bromodomain adjacent to zinc finger domain, 1A hs
HG-U95AV2:37971_AT bromodomain adjacent to zinc finger domain, 1A hs
HG-U95C:49208_AT bromodomain adjacent to zinc finger domain, 1A hs
HG-U95B:57543_AT bromodomain adjacent to zinc finger domain, 1A hs
HG-U95E:69491_AT bromodomain adjacent to zinc finger domain, 1A hs
HG-U95E:77858_AT bromodomain adjacent to zinc finger domain, 1A hs
MG-U74BV2:109345_AT bromodomain adjacent to zinc finger domain 1A mm
MG-U74BV2:112059_AT bromodomain adjacent to zinc finger domain 1A mm
MG-U74BV2:112687_AT bromodomain adjacent to zinc finger domain 1A mm
MG-U74CV2:130549_F_AT bromodomain adjacent to zinc finger domain 1A mm
MOE430B:1433599_AT bromodomain adjacent to zinc finger domain 1A mm
MOUSE430_2:1433599_AT bromodomain adjacent to zinc finger domain 1A mm
MOE430B:1447930_AT bromodomain adjacent to zinc finger domain 1A mm
MOUSE430_2:1447930_AT bromodomain adjacent to zinc finger domain 1A mm
RG-U34B:RC_AA955756_AT bromodomain adjacent to zinc finger domain, 1A (predicted) rn
RAE230B:1377727_AT bromodomain adjacent to zinc finger domain, 1A (predicted) rn
RAT230_2:1377727_AT bromodomain adjacent to zinc finger domain, 1A (predicted) rn
RAE230B:1385853_AT bromodomain adjacent to zinc finger domain, 1A (predicted) rn
RAT230_2:1385853_AT bromodomain adjacent to zinc finger domain, 1A (predicted) rn
RAE230B:1378446_AT Bromodomain adjacent to zinc finger domain, 1A (predicted) rn
RAT230_2:1378446_AT Bromodomain adjacent to zinc finger domain, 1A (predicted) rn
RAE230A:1374113_AT Bromodomain adjacent to zinc finger domain, 1A (predicted) rn
RAT230_2:1374113_AT Bromodomain adjacent to zinc finger domain, 1A (predicted) rn
RG-U34C:RC_AA818421_AT Bromodomain adjacent to zinc finger domain, 1A (predicted) rn
RG-U34B:RC_AA964781_AT Bromodomain adjacent to zinc finger domain, 1A (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39888 Hypothetical protein H20J04.2 [Caenorhabditis elegans] ref|NP_494767.1| H20J04.2 [Caenorhabditis elegans] 0.0
blast CAE60124 Hypothetical protein CBG03667 [Caenorhabditis briggsae] 0.0
blast AAF39890 Hypothetical protein H20J04.4 [Caenorhabditis elegans] ref|NP_494765.2| H20J04.4 [Caenorhabditis elegans] 0.0
blast XP_861743 PREDICTED: similar to bromodomain adjacent to zinc finger domain, 1A isoform a isoform 8 [Canis familiaris] 3.0E-50
blast XP_537409 PREDICTED: similar to bromodomain adjacent to zinc finger domain, 1A isoform a isoform 2 [Canis familiaris] 8.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 1.5E-10
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 1.8E-31
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 1.2E-75
Pfam IPR001487 EMBL-EBI Bromodomain 2.3E-30
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 1.5E-10
Pfam IPR001487 EMBL-EBI Bromodomain 2.3E-30
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 1.5E-10
Pfam IPR001487 EMBL-EBI Bromodomain 2.3E-30
Sequence
Target Sequence 
>C. ELEGANS:185310_AT
aaagagccgccaactattcgaactgcaagtggtcgggctgtaaaacgagttcattattct
gatattcatgaaggattaagcttgaaaaatcggaaatccaatggatccatgccagtcaca
ccttcggagagacctgttagaaatgtttctgttagaatatttgacgttgaaaacgagaat
gttttaactgatgaagatgattctgacggtgaaaatacgcgaaagcgaaagacaccaaca
tccaagaaatcagtcacatcaacaccgactacaaatgatatttcccgtgtcataatacca
aatattaaagagaaaatgacattaattgagacattattgaaagaagcaatgcgtcaagaa
tgttcatggccattccttcaaccagttgattcgaaagaagttccagattactatgacgtc
atcaaacggcctatgaatttgagaactatgatgaataagattaagcagaggatttataat
aaacctattgaggttcgcaacgacttccaactaatcctatcaaattgcgagacgtacaat
gagccggaaaatgaaatctacaagctttctcgagaacttcacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGAGCCGCCAACTATTCGAACTG 474 121 3763 Antisense
GAACTGCAAGTGGTCGGGCTGTAAA 437 347 3782 Antisense
TCCAATGGATCCATGCCAGTCACAC 641 587 3859 Antisense
CCAGTCACACCTTCGGAGAGACCTG 427 271 3874 Antisense
ATCAGTCACATCAACACCGACTACA 450 29 4011 Antisense
GATATTTCCCGTGTCATAATACCAA 231 423 4039 Antisense
GGCCATTCCTTCAACCAGTTGATTC 123 543 4130 Antisense
CTATGACGTCATCAAACGGCCTATG 251 225 4173 Antisense
TGAGGTTCGCAACGACTTCCAACTA 269 567 4251 Antisense
CGACTTCCAACTAATCCTATCAAAT 618 251 4263 Antisense
CAAGCTTTCTCGAGAACTTCACGAT 7 187 4323 Antisense
Sequence Source Affymetrix Proprietary Database