[Home] | [Total List]

[185309_at]

Description Y52B11A.5 /REP_DB=WormBase Gene ID /WP=CE20294 /TR=Q9XWF3 /GB=CAA21719.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 39.2
(-3)
A 		44
(-1.9)
A 		65.3
(3)
A 		45.3
(-1.6)
A 		26
B 47.7
(-3)
A 		58
(-1.9)
A 		53.9
(-2.3)
A 		101.9
(3)
A 		54
C 34
(-1.8)
A 		47.6
(-1)
A 		13.5
(-3)
A 		116
(3)
A 		103
avr 40.3
(-3) 		49.9
(-1.8) 		44.2
(-2.5) 		87.7
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 14.8
(-3)
A 		56.3
(1.6)
A 		69.4
(3)
A 		66.9
(2.7)
A 		39.1
(-0.3)
A 		58.9
(1.8)
A 		55
B 63.7
(2.7)
A 		66
(3)
A 		33.4
(-1.9)
A 		49.8
(0.6)
A 		45.2
(-0.1)
A 		25.7
(-3)
A 		40
C 61.3
(0.6)
A 		59.7
(0.3)
A 		73.7
(3)
A 		57.7
(-0.1)
A 		67.4
(1.8)
A 		42.5
(-3)
A 		31
avr 46.6
(-1.6) 		60.7
(3) 		58.8
(2.4) 		58.1
(2.1) 		50.6
(-0.3) 		42.4
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 14.3
(1.4)
A 		9.5
(-1.3)
A 		17.1
(3)
A 		6.6
(-3)
A 		11
B 15.2
(-1.2)
A 		14.3
(-1.8)
A 		12.5
(-3)
A 		21.7
(3)
A 		9
C 11.3
(-0.3)
A 		13.7
(0.6)
A 		4.7
(-3)
A 		19.6
(3)
A 		15
avr 13.6
(-0.1) 		12.5
(-1.6) 		11.4
(-3) 		16
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.7
(-3)
A 		20
(3)
A 		15.1
(1.3)
A 		17
(2)
A 		11.8
(0.2)
A 		14.3
(1)
A 		17
B 22.1
(3)
A 		22
(3)
A 		8.1
(-3)
A 		13.2
(-0.8)
A 		18.3
(1.4)
A 		9.6
(-2.4)
A 		14
C 22.7
(3)
A 		18.2
(0.6)
A 		18.8
(0.9)
A 		11.6
(-3)
A 		21.8
(2.5)
A 		14.2
(-1.6)
A 		11
avr 15.8
(-0.5) 		20.1
(3) 		14
(-1.9) 		13.9
(-2) 		17.3
(0.7) 		12.7
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185309_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1261
Sequence Type Exemplar sequence
Representative Public ID Y52B11A.5 NCBI
Target Description Y52B11A.5 /REP_DB=WormBase Gene ID /WP=CE20294 /TR=Q9XWF3 /GB=CAA21719.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060456(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060456 NCBI Caenorhabditis elegans Y52B11A.5 (Y52B11A.5) mRNA, complete cds. 11/11 None
GENEFINDER00000015604 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11023611:11025622:1 11/11 None
Y52B11A.5 ENSEMBL cdna:known chromosome:CEL140:I:11023611:11025622:1 gene:Y52B11A.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015591 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11023541-11025553(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y52B11A.5
Entrez Gene 190182 Entrez gene
SwissProt Q9XWF3 EMBL-EBI
WormBase CE20294 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21719 Hypothetical protein Y52B11A.5 [Caenorhabditis elegans] ref|NP_492857.1| Y52B11A.5 [Caenorhabditis elegans] 1.0E-119
blast CAE63523 Hypothetical protein CBG08002 [Caenorhabditis briggsae] 2.0E-66
blast CAE63525 Hypothetical protein CBG08004 [Caenorhabditis briggsae] 9.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492857.1 1 5-24
Y52B11A.5 1 5-24
GENEFINDER00000015604 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:185309_AT
ccaccgccacgtggtgtcaagtgtccggcgggttggacgttatggaagaggtcacaggga
aattggtgtattagggtattccacggacagtacacaaacccccaagccgaggcacaatgc
catgccaagggcgccaccctcaccgggctgcaaactgccgccgaaagaaattcactggcc
aaacttggatacaatctgatccatcaacacaaatatggggatgcggcaatttggctcggt
gccagaagaaaaggctcgtgcccgagagccggaatctgcagcccgcgggatacgttcttc
tggactgataagcacactaggggtactgctggatttgtattctcacctggacagcctgat
ggaatcaccgatggatataatggaccatggggagttcaatcctgtgtgcatcaattcgtg
ttcccaagtggctcaactcatccgagatggccaggaattccacacggagcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCGCCACGTGGTGTCAAGTGTC 616 273 124 Antisense
GTCAAGTGTCCGGCGGGTTGGACGT 477 421 139 Antisense
GGCACAATGCCATGCCAAGGGCGCC 95 535 234 Antisense
GATGCGGCAATTTGGCTCGGTGCCA 146 415 343 Antisense
GGGATACGTTCTTCTGGACTGATAA 306 495 410 Antisense
CACACTAGGGGTACTGCTGGATTTG 443 193 436 Antisense
ATTCTCACCTGGACAGCCTGATGGA 230 7 462 Antisense
GGAGTTCAATCCTGTGTGCATCAAT 573 517 514 Antisense
ATTCGTGTTCCCAAGTGGCTCAACT 625 9 537 Antisense
GTGGCTCAACTCATCCGAGATGGCC 684 491 551 Antisense
TGGCCAGGAATTCCACACGGAGCAC 224 545 571 Antisense
Sequence Source Affymetrix Proprietary Database