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[185308_at]

Description C40A11.2 /REP_DB=WormBase Gene ID /WP=CE19365 /TR=Q9TZA7 /GB=AAC68760.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 10
(-3)
A 		11.3
(-2.8)
A 		13.7
(-2.3)
A 		42.9
(3)
A 		33
B 27.7
(3)
A 		10.6
(-1.2)
A 		3.1
(-3)
A 		26.8
(2.8)
A 		25
C 29.2
(-1.5)
A 		30.5
(-1.4)
A 		13.9
(-3)
A 		75.4
(3)
A 		62
avr 22.3
(-1.1) 		17.5
(-1.9) 		10.2
(-3) 		48.4
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 67.7
(3)
A 		27.9
(-0.7)
A 		6.2
(-2.7)
A 		6.4
(-2.6)
A 		2.6
(-3)
A 		63.7
(2.6)
A 		65
B 18.1
(-1.2)
A 		7.7
(-2.5)
A 		4.6
(-2.8)
A 		3.3
(-3)
A 		52.8
(3)
A 		20
(-1)
A 		50
C 6.4
(-2.7)
A 		5.5
(-2.8)
A 		8.3
(-2.4)
A 		4.3
(-3)
A 		33.1
(1.3)
A 		44.7
(3)
M 		40
avr 30.7
(1.1) 		13.7
(-1.6) 		6.4
(-2.7) 		4.7
(-3) 		29.5
(0.9) 		42.8
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.6
(-1.3)
A 		2.5
(-3)
A 		3.6
(-1.3)
A 		6.3
(3)
A 		4
B 8.8
(3)
A 		2.6
(-1.6)
A 		0.7
(-3)
A 		5.7
(0.7)
A 		8
C 9.7
(0.7)
A 		8.8
(0)
A 		4.8
(-3)
A 		12.7
(3)
A 		8
avr 7.4
(2.1) 		4.6
(-1.2) 		3
(-3) 		8.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 12.5
(1.8)
A 		9.9
(0.7)
A 		1.3
(-2.8)
A 		1.6
(-2.7)
A 		0.8
(-3)
A 		15.5
(3)
A 		15
B 6.3
(-1.4)
A 		2.6
(-2.5)
A 		1.1
(-2.9)
A 		0.9
(-3)
A 		21.5
(3)
A 		7.5
(-1.1)
A 		21
C 2.4
(-2.4)
A 		1.7
(-2.7)
A 		2.1
(-2.5)
A 		0.9
(-3)
A 		10.7
(1.2)
A 		15
(3)
M 		14
avr 7.1
(0.1) 		4.7
(-1.1) 		1.5
(-2.8) 		1.1
(-3) 		11
(2.1) 		12.7
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185308_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5939
Sequence Type Exemplar sequence
Representative Public ID C40A11.2 NCBI
Target Description C40A11.2 /REP_DB=WormBase Gene ID /WP=CE19365 /TR=Q9TZA7 /GB=AAC68760.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061797(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061797 NCBI Caenorhabditis elegans C40A11.2 (C40A11.2) mRNA, complete cds. 11/11 None
C40A11.2.1 ENSEMBL cdna:known chromosome:CEL140:II:2146964:2148719:1 gene:C40A11.2 11/11 None
C40A11.2.2 ENSEMBL cdna:known chromosome:CEL140:II:2146964:2148776:1 gene:C40A11.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005079 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2146962-2148749(+) 92.98 100.0
Public Domain and Genome References
Gene Title
Ensembl C40A11.2
Entrez Gene 183352 Entrez gene
SwissProt Q9TZA7 EMBL-EBI
WormBase CE34742 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68760 Hypothetical protein C40A11.2 [Caenorhabditis elegans] ref|NP_494198.3| C40A11.2 [Caenorhabditis elegans] 1.0E-122
blast NP_494320 F22E5.6 [Caenorhabditis elegans] gb|AAB66172.2| Hypothetical protein F22E5.6 [Caenorhabditis elegans] 5.0E-39
blast AAC68762 Hypothetical protein C40A11.7 [Caenorhabditis elegans] ref|NP_494199.1| C40A11.7 [Caenorhabditis elegans] 2.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 2.4E-29
Sequence
Target Sequence 
>C. ELEGANS:185308_AT
tgctcacaagtgatattccggtctcaatcgacgaatccgggtgcatttttgtggatcggt
ccccgaaaaatttcagcctgattctaaaatatctgaaagaaggtgatgacgtggaacttc
caaagtttgaacgagaactgcaagaagtgagaagagaagccgaattttaccttttagacg
gtctagtcgacctatgtgattcttttcttaaaattcggtcatatgaaacttcggaggagc
ttcttcatattattgcaaactgcaaaaagacagcaattcttgtgatcagctatacagttc
acaatgatcacctctggaactctccagaatccttcaattttcaatatgttctcgaaaatc
caaagttggatgtctatttcaaacaatgtgaatgcgaagatgaatctgataaatctcggc
gtgaagatggagtcaataaaggtcaccaatcatggatttatcggctgtactctccgatta
aaggatttaaaacatttacaaattttgataaattggagaaatatattaatgggaggctac
gccgccgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCACAAGTGATATTCCGGTCTC 116 581 113 Antisense
ATTCCGGTCTCAATCGACGAATCCG 377 5 127 Antisense
GACGAATCCGGGTGCATTTTTGTGG 241 375 142 Antisense
TCGGTCCCCGAAAAATTTCAGCCTG 164 605 168 Antisense
AGTCGACCTATGTGATTCTTTTCTT 280 61 297 Antisense
AACTTCGGAGGAGCTTCTTCATATT 657 137 339 Antisense
GACAGCAATTCTTGTGATCAGCTAT 590 367 381 Antisense
CACAATGATCACCTCTGGAACTCTC 81 195 412 Antisense
GGAACTCTCCAGAATCCTTCAATTT 245 529 428 Antisense
ATGGATTTATCGGCTGTACTCTCCG 512 51 564 Antisense
ATTAATGGGAGGCTACGCCGCCGTA 379 11 637 Antisense
Sequence Source Affymetrix Proprietary Database