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[185306_at]

Description F55A12.5 /REP_DB=WormBase Gene ID /WP=CE11125 /TR=O01756 /GB=AAB54123.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 68      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 83      6grp_total > 58      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 292
1 2 3 4 range
A 473
(3)
P 		221.1
(-3)
P 		284.3
(-1.5)
P 		447.5
(2.4)
P 		252
B 488.2
(3)
P 		306.8
(-3)
P 		309.3
(-2.9)
P 		338.2
(-2)
P 		181
C 512.6
(3)
P 		345.9
(-3)
P 		400.6
(-1)
P 		398.1
(-1.1)
P 		167
avr 491.3
(3) 		291.3
(-3) 		331.4
(-1.8) 		394.6
(0.1) 		200

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 436.5
(-0.4)
P 		400.3
(-1.2)
P 		421.5
(-0.7)
P 		409.7
(-1)
P 		321.7
(-3)
P 		586.9
(3)
P 		265
B 547.5
(2.6)
P 		471.8
(0.6)
P 		337
(-3)
P 		404.5
(-1.2)
P 		443.3
(-0.2)
P 		561.4
(3)
P 		224
C 431.8
(-1.2)
P 		499.2
(0.1)
P 		430.6
(-1.2)
P 		334.2
(-3)
P 		467.7
(-0.5)
P 		654.9
(3)
P 		321
avr 471.9
(-0.6) 		457.1
(-1) 		396.4
(-2.6) 		382.8
(-3) 		410.9
(-2.2) 		601.1
(3) 		218
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 172.2
(3)
P 		48
(-3)
P 		74.3
(-1.7)
P 		65.5
(-2.2)
P 		124
B 155.7
(3)
P 		75.8
(-2.7)
P 		71.7
(-3)
P 		72.1
(-3)
P 		84
C 169.7
(3)
P 		99.5
(-1.1)
P 		139.6
(1.2)
P 		67.1
(-3)
P 		103
avr 165.9
(3) 		74.4
(-2.6) 		95.2
(-1.3) 		68.2
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 80.5
(-3)
P 		142.4
(3)
P 		91.8
(-1.9)
P 		103.9
(-0.8)
P 		97.1
(-1.4)
P 		142.9
(3)
P 		62
B 190.5
(2.1)
P 		157
(0.5)
P 		81.8
(-3)
P 		107.1
(-1.8)
P 		180.1
(1.6)
P 		209.3
(3)
P 		128
C 160
(0.7)
P 		152.3
(0.4)
P 		109.6
(-1.3)
P 		67.2
(-3)
P 		151.3
(0.3)
P 		219.2
(3)
P 		152
avr 143.7
(0.1) 		150.6
(0.6) 		94.4
(-2.9) 		92.7
(-3) 		142.8
(0.1) 		190.5
(3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185306_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1285
Sequence Type Exemplar sequence
Representative Public ID F55A12.5 NCBI
Target Description F55A12.5 /REP_DB=WormBase Gene ID /WP=CE11125 /TR=O01756 /GB=AAB54123.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059172(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059172 NCBI Caenorhabditis elegans F55A12.5 (F55A12.5) mRNA, complete cds. 11/11 None
SNAP00000029040 ENSEMBL cdna:SNAP chromosome:CEL140:I:5345931:5349464:1 11/11 None
GENEFINDER00000029061 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5345931:5349464:1 11/11 None
F55A12.5 ENSEMBL cdna:known chromosome:CEL140:I:5345931:5349604:1 gene:F55A12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5345930-5349464(+) 96.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55A12.5
Entrez Gene 172181 Entrez gene
SwissProt O01756 EMBL-EBI
WormBase CE11125 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54123 Hypothetical protein F55A12.5 [Caenorhabditis elegans] ref|NP_491573.1| F55A12.5 [Caenorhabditis elegans] 0.0
blast CAE66936 Hypothetical protein CBG12328 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185306_AT
aagtagaaattcccgtgatatcatcggaatcagaagaagaagaatatgaagaggaagatg
aatatgaggaatatgaagacgatgaagatgaggatgaatattatgaggaagaagaggaaa
atgaagtggaagatgatgatttcttgactgaaacacaactggaagaactcatggaacaaa
ttattttgcagacttctgtcatgttcagagatcagcgtatgaagaagtttgggcttgaaa
aggaaatgataaaattcgacggtgcaactgacgaggaaatccttctccaagctgagcaaa
aactggcaaaaattactgaaactctgaagaccacttcgaataaacttcagaacttttgta
ctccgagtagttcaagtgtgaaaactcatcagcctcttcaagctatgccatcggctgttt
ctaaactagagaaatcagtggaccatgattcgaaaaagtgccttggctgtcagagtgatg
aagtacaagaagctgctcttcgtcgcctcgagcaaatggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTAGAAATTCCCGTGATATCATC 462 157 2000 Antisense
TTTGCAGACTTCTGTCATGTTCAGA 414 667 2184 Antisense
GGTGCAACTGACGAGGAAATCCTTC 121 501 2260 Antisense
GAAATCCTTCTCCAAGCTGAGCAAA 109 363 2275 Antisense
TACTGAAACTCTGAAGACCACTTCG 565 645 2313 Antisense
TAAACTTCAGAACTTTTGTACTCCG 262 639 2340 Antisense
AGTGTGAAAACTCATCAGCCTCTTC 640 59 2374 Antisense
CATCAGCCTCTTCAAGCTATGCCAT 274 213 2386 Antisense
TATGCCATCGGCTGTTTCTAAACTA 564 653 2403 Antisense
AAGTGCCTTGGCTGTCAGAGTGATG 696 157 2455 Antisense
CTCTTCGTCGCCTCGAGCAAATGGC 242 229 2495 Antisense
Sequence Source Affymetrix Proprietary Database