[Home] | [Total List]

[185304_s_at]

Description F13G11.1A /REP_DB=WormBase Gene ID /WP=CE20684 /TR=Q9U3J5 /GB=CAB05898.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 48      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 0      6grp_total > 48      4grp_total > 03      6grp_highest_sub > Cu      6grp_cgc > 17      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4361
1 2 3 4 range
A 2355
(-1.1)
P 		1782.4
(-2.2)
P 		1375.8
(-3)
P 		4549.8
(3)
P 		3174
B 2232.9
(-1.8)
P 		1777.8
(-2.4)
P 		1336
(-3)
P 		5697.4
(3)
P 		4361
C 2097.7
(-1.4)
P 		1859.9
(-1.9)
P 		1377.3
(-3)
P 		4070.1
(3)
P 		2693
avr 2228.5
(-1.5) 		1806.7
(-2.2) 		1363
(-3) 		4772.4
(3) 		3409

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2084
1 2 3 4 5 6 range
A 2086
(1.8)
P 		1333.5
(-0.4)
P 		675.1
(-2.3)
P 		429.7
(-3)
P 		975.3
(-1.4)
P 		2513.4
(3)
P 		2084
B 2231.4
(3)
P 		1266.4
(-1)
P 		868.4
(-2.7)
P 		792.4
(-3)
P 		870.9
(-2.7)
P 		1971.7
(1.9)
P 		1439
C 2368.4
(3)
P 		1162.4
(-1.4)
P 		900.3
(-2.4)
P 		742.1
(-3)
P 		1010.6
(-2)
P 		2104
(2)
P 		1626
avr 2228.6
(3) 		1254.1
(-0.7) 		814.6
(-2.4) 		654.7
(-3) 		952.3
(-1.9) 		2196.4
(2.9) 		1574
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 905
1 2 3 4 range
A 857.5
(3)
P 		386.9
(-2.7)
P 		359.7
(-3)
P 		666
(0.7)
P 		498
B 712.1
(-0.3)
P 		439.1
(-2.1)
P 		309.6
(-3)
P 		1214.1
(3)
P 		905
C 694.4
(3)
P 		534.7
(-1.5)
P 		480
(-3)
P 		686.3
(2.8)
P 		214
avr 754.7
(1.7) 		453.6
(-2.1) 		383.1
(-3) 		855.5
(3) 		472

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 769
1 2 3 4 5 6 range
A 384.5
(0.3)
P 		474.3
(1.4)
P 		147
(-2.5)
P 		109
(-3)
P 		294.3
(-0.8)
P 		611.9
(3)
P 		503
B 776.4
(3)
P 		421.5
(-0.8)
P 		210.9
(-3)
P 		209.9
(-3)
P 		353.8
(-1.5)
P 		735.2
(2.6)
P 		567
C 877.9
(3)
P 		354.7
(-1.3)
P 		229.1
(-2.3)
P 		149.2
(-3)
P 		327
(-1.5)
P 		704.3
(1.6)
P 		729
avr 679.6
(3) 		416.8
(-0) 		195.7
(-2.5) 		156
(-3) 		325
(-1.1) 		683.8
(3) 		528
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185304_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8606
Sequence Type Exemplar sequence
Representative Public ID F13G11.1A NCBI
Target Description F13G11.1A /REP_DB=WormBase Gene ID /WP=CE20684 /TR=Q9U3J5 /GB=CAB05898.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070369(11), NM_070370(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070369 NCBI Caenorhabditis elegans F13G11.1a (F13G11.1) mRNA, complete cds. 11/11 None
NM_070370 NCBI Caenorhabditis elegans F13G11.1b (F13G11.1) mRNA, complete cds. 11/11 None
SNAP00000040042 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14622505:14623583:1 11/11 None
GENEFINDER00000040046 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14619421:14623583:1 11/11 None
F13G11.1a ENSEMBL cdna:known chromosome:CEL140:IV:14616210:14623925:1 gene:F13G11.1 11/11 None
F13G11.1b.1 ENSEMBL cdna:known chromosome:CEL140:IV:14616569:14623583:1 gene:F13G11.1 11/11 None
F13G11.1b.3 ENSEMBL cdna:known chromosome:CEL140:IV:14619248:14623583:1 gene:F13G11.1 11/11 None
F13G11.1b.2 ENSEMBL cdna:known chromosome:CEL140:IV:14619417:14623583:1 gene:F13G11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14616215-14623589(+) 100.0 100.0
Public Domain and Genome References
Ensembl F13G11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05898 Hypothetical protein F13G11.1a [Caenorhabditis elegans] ref|NP_502770.1| F13G11.1a [Caenorhabditis elegans] 0.0
blast CAB05899 Hypothetical protein F13G11.1b [Caenorhabditis elegans] ref|NP_502771.1| F13G11.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001275 EMBL-EBI DM DNA-binding 9.2E-26
Pfam IPR001275 EMBL-EBI DM DNA-binding 9.2E-26
Sequence
Target Sequence 
>C. ELEGANS:185304_S_AT
aattggctcagccgatcgctttaactccatcaccacaaatgtcactggcctccacacttg
ctcagattccaatgtctactccggtttgtatgccttcaatgatcacgccgacgtctttcc
tggacattccatcgacctcgagtccaatgctgccattccaaatctccacgacgacttctc
cgatgcttcagcgtcagacaccaatcttgacaccacagatgtctccattcaaaccagtcg
gagtcgctactccacagccacctgcgctaagcaacttgtctgctggacaggagctatcct
cattcatccttcattccgtcgtacttcaagctcaacaagcacaacagaagactgcacaac
agttgatcccgacttctatgccatcagagttggaatcaacactttctcttctccgcttgc
aacaatcatcgttgggtgatttgatcaagctcagtggaatccaacttccaactcttccaa
ccactcagccaatgctcacacctcaaatgccaacacttccgatgatgcagaaagcgttgc
cgactgttttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGGCTCAGCCGATCGCTTTAAC 608 179 941 Antisense
AATGTCTACTCCGGTTTGTATGCCT 628 163 1011 Antisense
TGTATGCCTTCAATGATCACGCCGA 604 559 1027 Antisense
TTCTCCGATGCTTCAGCGTCAGACA 5 693 1116 Antisense
AGATGTCTCCATTCAAACCAGTCGG 703 67 1157 Antisense
CCACCTGCGCTAAGCAACTTGTCTG 587 273 1198 Antisense
ACAGGAGCTATCCTCATTCATCCTT 599 107 1227 Antisense
TTCCGTCGTACTTCAAGCTCAACAA 558 697 1254 Antisense
CCCGACTTCTATGCCATCAGAGTTG 281 261 1308 Antisense
CAAATGCCAACACTTCCGATGATGC 562 193 1444 Antisense
CAGAAAGCGTTGCCGACTGTTTTGC 392 205 1468 Antisense
Sequence Source Affymetrix Proprietary Database