[Home] | [Total List]

[185303_at]

Description E04F6.10 /REP_DB=WormBase Gene ID /WP=CE27905 /TR=Q19065 /GB=AAA68365.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 27      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 42.6
(-2.7)
A 		89.1
(2.7)
P 		39.9
(-3)
A 		92.1
(3)
A 		52
B 72.7
(2.9)
M 		69.7
(2.3)
P 		73
(3)
P 		45
(-3)
A 		28
C 49.6
(-0.9)
A 		75.1
(1.2)
A 		24
(-3)
A 		97.6
(3)
P 		74
avr 55
(-1.3) 		78
(3) 		45.6
(-3) 		78.2
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 60.6
(2.4)
M 		63.8
(3)
A 		43.5
(-1.1)
P 		45.4
(-0.7)
A 		59.2
(2.1)
P 		33.9
(-3)
A 		30
B 61.1
(1.2)
P 		81.6
(3)
P 		66
(1.6)
P 		80.4
(2.9)
A 		49.4
(0.2)
A 		13.7
(-3)
A 		68
C 51.1
(-0.4)
P 		79.4
(3)
P 		43.2
(-1.4)
A 		30
(-3)
A 		41.4
(-1.6)
A 		32.9
(-2.6)
A 		49
avr 57.6
(0.8) 		74.9
(3) 		50.9
(0) 		51.9
(0.1) 		50
(-0.1) 		26.8
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.5
(0.4)
A 		19.3
(3)
P 		10.4
(-3)
A 		13.5
(-0.9)
A 		9
B 23.2
(3)
M 		17.2
(0.4)
P 		16.9
(0.2)
P 		9.6
(-3)
A 		14
C 16.4
(0.6)
A 		21.6
(3)
A 		8.4
(-3)
A 		16.5
(0.7)
P 		13
avr 18.4
(2.2) 		19.4
(3) 		11.9
(-3) 		13.2
(-2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 11.2
(-1.8)
M 		22.7
(3)
A 		9.5
(-2.5)
P 		11.5
(-1.7)
A 		17.9
(1)
P 		8.3
(-3)
A 		14
B 21.2
(1.4)
P 		27.2
(3)
P 		16
(-0)
P 		21.3
(1.4)
A 		20.1
(1.1)
A 		5.1
(-3)
A 		22
C 18.9
(1.3)
P 		24.2
(3)
P 		11
(-1.4)
A 		6
(-3)
A 		13.4
(-0.6)
A 		11
(-1.4)
A 		18
avr 17.1
(0.3) 		24.7
(3) 		12.2
(-1.5) 		12.9
(-1.3) 		17.1
(0.3) 		8.1
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185303_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5734
Sequence Type Exemplar sequence
Representative Public ID E04F6.10 NCBI
Target Description E04F6.10 /REP_DB=WormBase Gene ID /WP=CE27905 /TR=Q19065 /GB=AAA68365.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063103
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
E04F6.10 ENSEMBL cdna:known chromosome:CEL140:II:7213987:7216888:-1 gene:E04F6.10 A 
SNAP00000032902 ENSEMBL cdna:SNAP chromosome:CEL140:II:7216532:7216888:-1 None
NM_063103 NCBI Caenorhabditis elegans E04F6.10 (E04F6.10) mRNA, complete cds. None
GENEFINDER00000032909 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7214163:7216888:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7214761-7216884(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E04F6.10
Entrez Gene 174186 Entrez gene
SwissProt Q19065 EMBL-EBI
WormBase CE35267 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE67574 Hypothetical protein CBG13103 [Caenorhabditis briggsae] 7.0E-89
blast AAA68365 Hypothetical protein E04F6.10 [Caenorhabditis elegans] ref|NP_495504.2| E04F6.10 [Caenorhabditis elegans] 6.0E-51
blast CAE67574 Hypothetical protein CBG13103 [Caenorhabditis briggsae] 3.0E-20
blast CAE67574 Hypothetical protein CBG13103 [Caenorhabditis briggsae] 5.0E-20
blast AAA68365 Hypothetical protein E04F6.10 [Caenorhabditis elegans] ref|NP_495504.2| E04F6.10 [Caenorhabditis elegans] 6.0E-20
blast AAA68365 Hypothetical protein E04F6.10 [Caenorhabditis elegans] ref|NP_495504.2| E04F6.10 [Caenorhabditis elegans] 2.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495504.2 1 37-59
E04F6.10 1 37-59
GENEFINDER00000032909 1 40-62
Sequence
Target Sequence 
>C. ELEGANS:185303_AT
ggaacgtgaattacgcctcaaggcgtttatggaagaatatgcaagaattgttcagttatt
cgatgatatagtttcaatgaaggaatcaatgggacgtcttgaaaaatatatgatcatcat
ggtgtgtcaagttcttgttgctcttatgatgctaaaaatggaggaattttctgcccaact
tcgccaacttactgtcaaacttcttgtttgtttcaaccacttttctaacgttttgcaact
tctcagtaacaacggaggagccatcttcatgtgtattcggttttttcaaagccagcgaca
acgtggagaatacgaattggaacatcgattcgaaaggggtccgtctggtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACGTGAATTACGCCTCAAGGCG 111 531 15 Antisense
CATCATGGTGTGTCAAGTTCTTGTT 127 213 129 Antisense
AGTTCTTGTTGCTCTTATGATGCTA 555 63 144 Antisense
ATGGAGGAATTTTCTGCCCAACTTC 290 49 172 Antisense
AACTTCGCCAACTTACTGTCAAACT 251 139 191 Antisense
TCAACCACTTTTCTAACGTTTTGCA 35 573 227 Antisense
AACGTTTTGCAACTTCTCAGTAACA 524 119 241 Antisense
GTAACAACGGAGGAGCCATCTTCAT 34 457 260 Antisense
GAGCCATCTTCATGTGTATTCGGTT 494 385 272 Antisense
GTATTCGGTTTTTTCAAAGCCAGCG 212 451 287 Antisense
GATTCGAAAGGGGTCCGTCTGGTCG 522 429 341 Antisense
Sequence Source Affymetrix Proprietary Database