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[185302_s_at]

Description Y106G6H.6 /REP_DB=WormBase Gene ID /WP=CE25186 /TR=Q9U2Z4 /GB=CAB63342.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      6grp_total > 98      4grp_total > 46      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 163.6
(3)
P 		105.4
(-2.2)
A 		96.2
(-3)
A 		120
(-0.9)
A 		67
B 190.6
(3)
P 		147.4
(-0.1)
A 		126.4
(-1.6)
M 		106
(-3)
A 		85
C 189.9
(3)
P 		138
(-0.5)
P 		112.7
(-2.2)
A 		100.8
(-3)
A 		89
avr 181.4
(3) 		130.3
(-1.2) 		111.8
(-2.8) 		108.9
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 110.6
(-3)
A 		169
(-1.7)
P 		159.1
(-1.9)
P 		180.8
(-1.4)
P 		296.2
(1.2)
P 		373.9
(3)
P 		263
B 181.6
(-2.2)
P 		153
(-3)
P 		173.9
(-2.4)
P 		184.3
(-2.2)
P 		317.1
(1.3)
P 		380.2
(3)
P 		227
C 143.1
(-2.8)
P 		163.4
(-2.3)
P 		165.1
(-2.2)
P 		136.1
(-3)
P 		279.2
(0.9)
P 		357.2
(3)
P 		221
avr 145.1
(-3) 		161.8
(-2.6) 		166
(-2.4) 		167.1
(-2.4) 		297.5
(1.1) 		370.4
(3) 		225
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 59.6
(3)
P 		22.9
(-2.2)
A 		25.2
(-1.9)
A 		17.6
(-3)
A 		42
B 60.8
(3)
P 		36.4
(-0.8)
A 		29.3
(-1.9)
M 		22.6
(-3)
A 		38
C 62.9
(3)
P 		39.7
(-0)
P 		39.3
(-0.1)
A 		17
(-3)
A 		46
avr 61.1
(3) 		33
(-1) 		31.3
(-1.3) 		19.1
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 20.4
(-3)
A 		60.1
(0.4)
P 		34.7
(-1.8)
P 		45.8
(-0.8)
P 		89.4
(2.9)
P 		91
(3)
P 		71
B 63.2
(-1.7)
P 		50.9
(-2.5)
P 		42.2
(-3)
P 		48.8
(-2.6)
P 		128.8
(2.2)
P 		141.8
(3)
P 		100
C 53.1
(-1.3)
P 		49.9
(-1.5)
P 		42
(-2)
P 		27.4
(-3)
P 		90.3
(1.1)
P 		119.6
(3)
P 		92
avr 45.6
(-2.5) 		53.6
(-1.9) 		39.6
(-3) 		40.7
(-2.9) 		102.8
(1.9) 		117.5
(3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185302_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1291
Sequence Type Exemplar sequence
Representative Public ID Y106G6H.6 NCBI
Target Description Y106G6H.6 /REP_DB=WormBase Gene ID /WP=CE25186 /TR=Q9U2Z4 /GB=CAB63342.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060330(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060330 NCBI Caenorhabditis elegans Y106G6H.6 (Y106G6H.6) mRNA, complete cds. 11/11 None
GENEFINDER00000001715 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10446411:10454256:-1 11/11 None
SNAP00000001706 ENSEMBL cdna:SNAP chromosome:CEL140:I:10451973:10454166:-1 11/11 None
Y106G6H.6.1 ENSEMBL cdna:known chromosome:CEL140:I:10451808:10454258:-1 gene:Y106G6H.6 11/11 None
Y106G6H.6.2 ENSEMBL cdna:known chromosome:CEL140:I:10451840:10454166:-1 gene:Y106G6H.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10451903-10454097(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y106G6H.6
Entrez Gene 172923 Entrez gene
SwissProt Q9U2Z4 EMBL-EBI
WormBase CE34225 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63342 Hypothetical protein Y106G6H.6 [Caenorhabditis elegans] ref|NP_492731.2| Y106G6H.6 [Caenorhabditis elegans] 0.0
blast CAB63337 Hypothetical protein Y106G6H.5 [Caenorhabditis elegans] ref|NP_492730.2| Y106G6H.5 [Caenorhabditis elegans] 0.0
blast CAE58942 Hypothetical protein CBG02210 [Caenorhabditis briggsae] 0.0
blast CAE58943 Hypothetical protein CBG02211 [Caenorhabditis briggsae] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR006076 EMBL-EBI FAD dependent oxidoreductase 5.4E-9
Pfam IPR006222 EMBL-EBI Glycine cleavage T protein (aminomethyl transferase) 3.2E-60
Sequence
Target Sequence 
>C. ELEGANS:185302_S_AT
gatatctacgatcgtcttttcgaaaagcaacctcatcattatatgccatcggtacggcgg
cgatgcaacgaaatgcgacctcgacatccggatatgactcttcgattcgctgaaacagct
acactgatgtgcttcgctttggcaaaacaatcaagccgagaacctgtccattatgctgca
gcggctcttcacggattcatgcttctcaaattaagaaaatattcggaagccatagaagct
gtaaatttcgccgtagaacggtacgatcgagccggtgagtggcaggatgatttggcgatt
cttctaacatacaaagctgaaggaatgatcggaataggacgctacaatcgagcaatcgaa
tatgcactgcgagtgatgaatgctgcaaaatgtgctcgagcacggcagcgagcaactatg
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATCTACGATCGTCTTTTCGAAA 82 427 598 Antisense
CAACCTCATCATTATATGCCATCGG 189 187 625 Antisense
ATGCCATCGGTACGGCGGCGATGCA 442 41 640 Antisense
GCAACGAAATGCGACCTCGACATCC 681 319 662 Antisense
CGGATATGACTCTTCGATTCGCTGA 709 243 686 Antisense
ACAGCTACACTGATGTGCTTCGCTT 141 107 712 Antisense
GAGAACCTGTCCATTATGCTGCAGC 106 393 755 Antisense
TCTTCACGGATTCATGCTTCTCAAA 281 617 783 Antisense
GAACGGTACGATCGAGCCGGTGAGT 95 349 853 Antisense
GATTTGGCGATTCTTCTAACATACA 451 427 886 Antisense
CGAGCACGGCAGCGAGCAACTATGC 92 251 994 Antisense
Sequence Source Affymetrix Proprietary Database