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[185301_at]

Description C09G12.9 /REP_DB=WormBase Gene ID /WP=CE19350 /TR=O76258 /GB=AAC25822.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 34.5
(3)
A 		4.4
(-3)
A 		4.8
(-2.9)
A 		4.5
(-3)
A 		30
B 3.7
(-3)
A 		21.9
(3)
A 		6.5
(-2.1)
A 		13.2
(0.1)
A 		18
C 29.4
(3)
A 		3.8
(-3)
A 		11.8
(-1.1)
A 		5.3
(-2.6)
A 		26
avr 22.5
(3) 		10
(-2.1) 		7.7
(-3) 		7.7
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 10.1
(-0.8)
A 		3.8
(-3)
A 		20.6
(3)
A 		6.6
(-2)
A 		4.9
(-2.6)
A 		8.4
(-1.4)
A 		17
B 3
(-3)
A 		11.1
(-2.1)
A 		56.9
(3)
A 		3.3
(-3)
A 		24.1
(-0.7)
A 		28.6
(-0.2)
A 		54
C 4.8
(-2.9)
A 		6.8
(-2.6)
A 		3.7
(-3)
A 		11.4
(-2)
A 		7.3
(-2.5)
A 		51
(3)
A 		47
avr 6
(-3) 		7.2
(-2.7) 		27.1
(2.4) 		7.1
(-2.7) 		12.1
(-1.4) 		29.3
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.6
(3)
A 		1
(-2.8)
A 		1.3
(-2.7)
A 		0.7
(-3)
A 		12
B 1.2
(-3)
A 		5.4
(3)
A 		1.5
(-2.6)
A 		2.8
(-0.7)
A 		4
C 9.7
(3)
A 		1.1
(-2.9)
A 		4.1
(-0.8)
A 		0.9
(-3)
A 		9
avr 7.8
(3) 		2.5
(-2) 		2.3
(-2.2) 		1.5
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.9
(-2)
A 		1.4
(-3)
A 		4.5
(3)
A 		1.7
(-2.4)
A 		1.5
(-2.8)
A 		2
(-1.8)
A 		3
B 1
(-3)
A 		3.7
(-1.7)
A 		13.8
(3)
A 		0.9
(-3)
A 		9.8
(1.1)
A 		10.7
(1.6)
A 		13
C 1.8
(-2.7)
A 		2.1
(-2.6)
A 		0.9
(-3)
A 		2.3
(-2.5)
A 		2.4
(-2.4)
A 		17.1
(3)
A 		16
avr 1.6
(-3) 		2.4
(-2.4) 		6.4
(0.5) 		1.6
(-3) 		4.6
(-0.8) 		9.9
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185301_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10534
Sequence Type Exemplar sequence
Representative Public ID C09G12.9 NCBI
Target Description C09G12.9 /REP_DB=WormBase Gene ID /WP=CE19350 /TR=O76258 /GB=AAC25822.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067963(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067963 NCBI Caenorhabditis elegans C09G12.9 (C09G12.9) mRNA, complete cds. 11/11 None
C09G12.9 ENSEMBL cdna:known chromosome:CEL140:IV:3510471:3514550:-1 gene:C09G12.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001984 4/11 Cross Hyb Matching Probes None
GENEFINDER00000001988 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3510476-3514556(-) 99.42 100.0
Public Domain and Genome References
Gene Title
Ensembl C09G12.9
Entrez Gene 182474 Entrez gene
SwissProt O76258 EMBL-EBI
WormBase CE34675 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256238_AT tumour susceptibility gene 101 (TSG101) family protein at
CANINE:1604694_AT similar to tumor susceptibility gene 101 cfa
CANINE_2:CFA.18857.1.S1_AT similar to tumor susceptibility gene 101 cfa
CANINE_2:CFAAFFX.14687.1.S1_AT similar to tumor susceptibility gene 101 cfa
CANINE_2:CFAAFFX.15853.1.S1_AT similar to tumor susceptibility gene 101 cfa
DROSOPHILA_2:1640247_AT tumor suppressor protein 101 dm
DROSGENOME1:148917_AT tumor suppressor protein 101 dm
CHICKEN:GGA.9332.1.S1_A_AT tumor susceptibility gene 101 gga
CHICKEN:GGAAFFX.3958.1.S1_AT tumor susceptibility gene 101 gga
HG-U95AV2:147_AT tumor susceptibility gene 101 hs
HC-G110:147_AT tumor susceptibility gene 101 hs
HG-U133_PLUS_2:201758_AT tumor susceptibility gene 101 hs
HG-FOCUS:201758_AT tumor susceptibility gene 101 hs
HG-U133A:201758_AT tumor susceptibility gene 101 hs
HG-U133A_2:201758_AT tumor susceptibility gene 101 hs
HUGENEFL:U82130_AT tumor susceptibility gene 101 hs
U133_X3P:G5454139_3P_AT tumor susceptibility gene 101 hs
HG-U95D:86642_AT Tumor susceptibility gene 101 hs
MU11KSUBA:U52945_S_AT tumor susceptibility gene 101 mm
MG-U74AV2:94809_AT tumor susceptibility gene 101 mm
MOE430A:1417004_AT tumor susceptibility gene 101 mm
MOUSE430A_2:1417004_AT tumor susceptibility gene 101 mm
MOUSE430_2:1417004_AT tumor susceptibility gene 101 mm
MU19KSUBC:TC39032_I_AT Tumor susceptibility gene 101, mRNA (cDNA clone MGC:5785 IMAGE:3490301) mm
MU19KSUBC:TC39032_R_AT Tumor susceptibility gene 101, mRNA (cDNA clone MGC:5785 IMAGE:3490301) mm
RG-U34C:RC_AI102502_AT tumor susceptibility gene 101 rn
RAE230A:1372122_AT tumor susceptibility gene 101 rn
RAT230_2:1372122_AT tumor susceptibility gene 101 rn
RAE230B:1383583_AT Tumor susceptibility gene 101 rn
RAT230_2:1383583_AT Tumor susceptibility gene 101 rn
RG-U34C:AA944055_AT Tumor susceptibility gene 101 rn
YEAST_2:1779605_AT Component of the ESCRT-I complex, which is involved in ubiquitin-dependent sorting of proteins into the endosome; homologous to the mouse and human Tsg101 tumor susceptibility gene; mutants exhibit a Class E Vps phenotype Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6464 protein modification inferred from electronic annotation QuickGO AmiGO
6512 ubiquitin cycle inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC25822 Hypothetical protein C09G12.9 [Caenorhabditis elegans] ref|NP_500364.2| C09G12.9 [Caenorhabditis elegans] 0.0
blast CAE69028 Hypothetical protein CBG15030 [Caenorhabditis briggsae] 8.0E-81
blast CAE69027 Hypothetical protein CBG15029 [Caenorhabditis briggsae] 8.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR008883 EMBL-EBI Tumour susceptibility gene 101 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185301_AT
catgaatgttccccaatcaacaccgtatccaatgggagcttctggagcatctccatatcc
atcggcttcatcaaatcctgctccaccaccaccacgtccaccacctgtaacggctcaaac
atctgtgagcagcagtagtggtggcaccattcaagccgacacaattcgagcatcagttat
gtcggctgttgaggagaaaattcgagcgaaactcagagagagaatgggcacaaatagcgc
agaaatggcatcaatccgtacgacgagcgacgagcttcgtgaaggacagcaaaagctgaa
aagaatgctcgaagagctcgaaactcaacggagcagccttcagaccgcctgtgaaatcta
tacggcaaagaaagcagagctcgcgaaagctctttcagacgctggaggcactgatgctcc
accaattgatgaggcaattgatgccgcttttccgttgcaccgacaaattgtgctcaatta
tgcgaaagatttgacatgtcaatcactgaaaaaacgccaaataacacttgccgaatacct
ccgccatgttcgtgacgtgtcccgagagcaatttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGAATGTTCCCCAATCAACACCG 282 211 600 Antisense
ATGGGAGCTTCTGGAGCATCTCCAT 542 49 631 Antisense
ATCCATCGGCTTCATCAAATCCTGC 341 39 656 Antisense
ACCACCTGTAACGGCTCAAACATCT 371 85 699 Antisense
TGGTGGCACCATTCAAGCCGACACA 427 553 738 Antisense
GGCATCAATCCGTACGACGAGCGAC 697 535 846 Antisense
ACTCAACGGAGCAGCCTTCAGACCG 72 101 922 Antisense
AGCTCTTTCAGACGCTGGAGGCACT 672 79 987 Antisense
CTTTTCCGTTGCACCGACAAATTGT 620 217 1046 Antisense
AAATAACACTTGCCGAATACCTCCG 408 117 1118 Antisense
GTGACGTGTCCCGAGAGCAATTTAT 74 483 1151 Antisense
Sequence Source Affymetrix Proprietary Database