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[185300_at]

Description Y106G6H.8 /REP_DB=WormBase Gene ID /WP=CE20418 /TR=Q9U2Z9 /GB=CAB63338.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 73      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 74      6grp_total > 64      4grp_total > 52      6grp_high1_sub > 03_04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 284
1 2 3 4 range
A 582.9
(1)
P 		679
(3)
P 		545.3
(0.2)
P 		394.6
(-3)
P 		284
B 578.4
(3)
P 		521.8
(1)
P 		472.7
(-0.7)
P 		405.7
(-3)
P 		173
C 526.8
(-0.6)
P 		580.2
(3)
P 		549.1
(0.9)
P 		491.5
(-3)
P 		89
avr 562.7
(1.9) 		593.7
(3) 		522.4
(0.4) 		430.6
(-3) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 620.9
(-2)
P 		585.4
(-3)
P 		796.7
(3)
P 		658.9
(-0.9)
P 		608.4
(-2.3)
P 		702.6
(0.3)
P 		211
B 627.8
(-0.4)
P 		559.6
(-3)
P 		671.7
(1.2)
P 		720
(3)
P 		640.8
(0)
P 		673.8
(1.3)
P 		160
C 575.7
(-3)
P 		596.4
(-2.2)
P 		734.1
(3)
P 		681.3
(1)
P 		618.7
(-1.4)
P 		607.8
(-1.8)
P 		158
avr 608.1
(-1.9) 		580.5
(-3) 		734.2
(3) 		686.7
(1.1) 		622.6
(-1.4) 		661.4
(0.2) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 212.2
(3)
P 		147.4
(0.5)
P 		142.6
(0.3)
P 		57.8
(-3)
P 		154
B 184.5
(3)
P 		128.9
(-0.4)
P 		109.5
(-1.6)
P 		86.5
(-3)
P 		98
C 174.4
(2.1)
P 		166.8
(1.6)
P 		191.4
(3)
P 		82.9
(-3)
P 		109
avr 190.4
(3) 		147.7
(0.8) 		147.8
(0.8) 		75.7
(-3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 114.5
(-3)
P 		208.2
(3)
P 		173.5
(0.8)
P 		167.1
(0.4)
P 		183.6
(1.4)
P 		171.1
(0.6)
P 		94
B 218.4
(0.4)
P 		186.3
(-1.6)
P 		163.1
(-3)
P 		190.7
(-1.3)
P 		260.3
(3)
P 		251.3
(2.4)
P 		97
C 213.4
(3)
P 		182
(0.5)
P 		186.8
(0.9)
P 		137
(-3)
P 		200.2
(2)
P 		203.5
(2.2)
P 		76
avr 182.1
(-0.9) 		192.2
(0.3) 		174.5
(-1.8) 		164.9
(-3) 		214.7
(3) 		208.6
(2.3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185300_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1501
Sequence Type Exemplar sequence
Representative Public ID Y106G6H.8 NCBI
Target Description Y106G6H.8 /REP_DB=WormBase Gene ID /WP=CE20418 /TR=Q9U2Z9 /GB=CAB63338.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060332(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060332 NCBI Caenorhabditis elegans Y106G6H.8 (Y106G6H.8) mRNA, complete cds. 11/11 None
GENEFINDER00000001720 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10460305:10460932:1 11/11 None
Y106G6H.8 ENSEMBL cdna:known chromosome:CEL140:I:10460301:10460990:1 gene:Y106G6H.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001707 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10460473-10460863(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y106G6H.8
Entrez Gene 190926 Entrez gene
SwissProt Q9U2Z9 EMBL-EBI
WormBase CE20418 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE58945 Hypothetical protein CBG02213 [Caenorhabditis briggsae] 6.0E-72
blast CAB63338 Hypothetical protein Y106G6H.8 [Caenorhabditis elegans] ref|NP_492733.1| Y106G6H.8 [Caenorhabditis elegans] 3.0E-58
blast CAB63338 Hypothetical protein Y106G6H.8 [Caenorhabditis elegans] ref|NP_492733.1| Y106G6H.8 [Caenorhabditis elegans] 4.0E-58
blast CAE58945 Hypothetical protein CBG02213 [Caenorhabditis briggsae] 7.0E-53
blast AAP05999 similar to NM_060332 Y106G6H [Schistosoma japonicum] 9.0E-22
blast AAP05999 similar to NM_060332 Y106G6H [Schistosoma japonicum] 1.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR006696 EMBL-EBI Protein of unknown function DUF423 2.2E-56
Pfam IPR006696 EMBL-EBI Protein of unknown function DUF423 2.2E-56
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492733.1 2 7-26,64-86
Y106G6H.8 2 7-26,64-86
GENEFINDER00000001720 4 21-38,48-70,108-130,140-155
Sequence
Target Sequence 
>C. ELEGANS:185300_AT
ccatttctcttggagcctacggatctcatgttctccgtgacaatccatcaatcgatgaac
gtcggcgaaccgctttcgacacggcttctcgttatcacttgatccactccctggctcttc
ttgcgtctccagctgctcgattcccacttgtaactgctggccttttcactgctggaatca
ctctattctgtggtccttgctatcattatagcatttctggagtcgagacaaccaggaaat
acactccaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATTTCTCTTGGAGCCTACGGATC 694 269 56 Antisense
GGAGCCTACGGATCTCATGTTCTCC 673 521 67 Antisense
ATGTTCTCCGTGACAATCCATCAAT 552 47 83 Antisense
CGATGAACGTCGGCGAACCGCTTTC 485 249 108 Antisense
CTTCTCGTTATCACTTGATCCACTC 272 221 140 Antisense
TCGATTCCCACTTGTAACTGCTGGC 516 603 192 Antisense
CCTTTTCACTGCTGGAATCACTCTA 224 269 216 Antisense
AATCACTCTATTCTGTGGTCCTTGC 520 171 231 Antisense
TTCTGTGGTCCTTGCTATCATTATA 138 695 241 Antisense
TAGCATTTCTGGAGTCGAGACAACC 90 651 264 Antisense
GACAACCAGGAAATACACTCCAATT 105 365 282 Antisense
Sequence Source Affymetrix Proprietary Database