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[185299_s_at]

Description C01B10.1 /REP_DB=WormBase Gene ID /WP=CE23511 /TR=Q17545 /GB=AAD47117.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 44      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 64      6grp_total > 55      4grp_total > 13      6grp_cgc > 55      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1031
1 2 3 4 range
A 590.3
(-0.1)
P 		168.6
(-2.8)
P 		145.1
(-3)
P 		1078.4
(3)
P 		933
B 559.1
(-0)
P 		165.4
(-2.9)
P 		144.9
(-3)
P 		982.8
(3)
P 		838
C 711.5
(0.3)
P 		154.5
(-3)
P 		187.6
(-2.8)
P 		1175.7
(3)
P 		1021
avr 620.3
(0) 		162.8
(-3) 		159.2
(-3) 		1079
(3) 		920

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 675
1 2 3 4 5 6 range
A 474.6
(-3)
P 		1128.4
(2.8)
P 		673.6
(-1.2)
P 		1008.6
(1.8)
P 		491.5
(-2.8)
P 		1149.1
(3)
P 		675
B 509.3
(-3)
P 		882.5
(1.4)
P 		947
(2.2)
P 		767.4
(0.1)
P 		641.2
(-1.4)
P 		1016.6
(3)
P 		507
C 663.8
(-2)
P 		994.4
(1.7)
P 		1106.9
(3)
P 		915.8
(0.8)
P 		578.6
(-3)
P 		908.1
(0.7)
P 		528
avr 549.2
(-3) 		1001.8
(2.7) 		909.2
(1.5) 		897.3
(1.4) 		570.4
(-2.7) 		1024.6
(3) 		475
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 214.9
(3)
P 		36.6
(-3)
P 		37.9
(-3)
P 		157.9
(1.1)
P 		178
B 178.3
(1.9)
P 		40.9
(-2.8)
P 		33.6
(-3)
P 		209.4
(3)
P 		176
C 235.5
(3)
P 		44.4
(-3)
P 		65.4
(-2.3)
P 		198.2
(1.8)
P 		191
avr 209.6
(3) 		40.6
(-3) 		45.6
(-2.8) 		188.5
(2.3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 87.5
(-3)
P 		401.3
(3)
P 		146.7
(-1.9)
P 		255.8
(0.2)
P 		148.3
(-1.8)
P 		279.8
(0.7)
P 		314
B 177.2
(-3)
P 		293.7
(0.5)
P 		230
(-1.4)
P 		203.3
(-2.2)
P 		260.5
(-0.5)
P 		379.1
(3)
P 		202
C 246
(0.1)
P 		303.4
(3)
P 		281.7
(1.9)
P 		184.2
(-3)
P 		187.2
(-2.8)
P 		304
(3)
P 		120
avr 170.2
(-3) 		332.8
(3) 		219.5
(-1.2) 		214.4
(-1.4) 		198.7
(-1.9) 		321
(2.6) 		163
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185299_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10557
Sequence Type Exemplar sequence
Representative Public ID C01B10.1 NCBI
Target Description C01B10.1 /REP_DB=WormBase Gene ID /WP=CE23511 /TR=Q17545 /GB=AAD47117.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068618(11), AF480440(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068618 NCBI Caenorhabditis elegans Dicer Related Helicase family member (drh-2) (drh-2) mRNA, complete cds. 11/11 None
AF480440 NCBI Caenorhabditis elegans dicer-related helicase-like (drh-2) mRNA, complete sequence. 11/11 None
SNAP00000026856 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6613902:6618482:-1 9/11 None
GENEFINDER00000026868 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6613929:6617600:-1 11/11 None
C01B10.1 ENSEMBL cdna:known chromosome:CEL140:IV:6613737:6617830:-1 gene:C01B10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6613907-6617606(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol drh-2
Ensembl C01B10.1
Entrez Gene 177426 Entrez gene
SwissProt Q17545 EMBL-EBI
WormBase CE33024 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4386 helicase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD47117 Dicer related helicase protein 2 [Caenorhabditis elegans] ref|NP_501019.2| Dicer Related Helicase family member (drh-2) [Caenorhabditis elegans] 0.0
blast A88708 protein C01B10.1 [imported] - Caenorhabditis elegans 0.0
blast AAB88350 Dicer related helicase protein 1 [Caenorhabditis elegans] ref|NP_501018.1| Dicer Related Helicase family member (drh-1) [Caenorhabditis elegans] gb|AAM76083.1| dicer-related helicase [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 4.9E-21
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 1.6E-8
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 4.9E-21
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 1.6E-8
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 4.9E-21
Sequence
Target Sequence 
>C. ELEGANS:185299_S_AT
taatgaccgaaacgatctccctaatccaaaattcgccaggagaattccgacaatgtgtag
atgaggaaagcaataaagtctggcctcgaatccagagagaagataccgataaagcacaaa
gaattaaagagcaaattaatcggaatattgtgtacaagatcgtttgtatgaaatgtgata
cagttttgtgcacgaataaggatattcgatcaaaaaacacgcaatacattgtgtgtaatc
ccggattttggagtctcgttcgaagaattcccttgccacttgaacaaagggcatcaaata
aatttaattcaactggatcgattgaatgtcttggcgagaggtgtggttcgaaacttggac
agttgatcgacgtgaatacagtgaatctcccgtgtctgaaagtaaaatctatcctgctac
tgattgaaagtaccaatgaacggatcctcgttaaacaatggaaaaatattctggatgaac
atttcacaccgaccacactaaagcagcgagatgttcaaacaatgaaagacgcggattatg
gtcgagcacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATGACCGAAACGATCTCCCTAAT 135 635 1838 Antisense
AAAGCAATAAAGTCTGGCCTCGAAT 601 123 1904 Antisense
ATCCCGGATTTTGGAGTCTCGTTCG 633 37 2075 Antisense
TCTCGTTCGAAGAATTCCCTTGCCA 538 609 2091 Antisense
ACTTGGACAGTTGATCGACGTGAAT 93 103 2190 Antisense
CGACGTGAATACAGTGAATCTCCCG 604 251 2205 Antisense
GTGAATCTCCCGTGTCTGAAAGTAA 338 467 2218 Antisense
AAAGTACCAATGAACGGATCCTCGT 302 121 2264 Antisense
TGGATGAACATTTCACACCGACCAC 193 551 2309 Antisense
ACACCGACCACACTAAAGCAGCGAG 256 109 2323 Antisense
AGACGCGGATTATGGTCGAGCACCA 287 71 2364 Antisense
Sequence Source Affymetrix Proprietary Database