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[185298_s_at]

Description ZK1193.2 /REP_DB=WormBase Gene ID /WP=CE05127 /TR=Q23409 /GB=AAA83291.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      6grp_highest_nonorm > 71      6grp_total > 53      4grp_total > 60      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 200
(1.1)
P 		175.4
(0.4)
P 		267.4
(3)
P 		55.9
(-3)
A 		212
B 245.4
(2.7)
P 		197.2
(1.2)
P 		254.6
(3)
P 		66.9
(-3)
A 		188
C 191.1
(1.4)
P 		169.5
(0.7)
P 		247.9
(3)
P 		39.8
(-3)
A 		208
avr 212.2
(1.7) 		180.7
(0.7) 		256.6
(3) 		54.2
(-3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 360
1 2 3 4 5 6 range
A 261.3
(-3)
P 		350.8
(1.6)
P 		378.9
(3)
P 		343
(1.2)
P 		327.8
(0.4)
P 		319.6
(-0)
P 		118
B 184.2
(-3)
P 		362
(3)
P 		278.1
(0.2)
P 		302.3
(1)
P 		308.1
(1.2)
P 		323.4
(1.7)
P 		178
C 289.4
(-2.6)
P 		353.9
(-1.2)
P 		544.5
(3)
P 		295.2
(-2.5)
P 		324.2
(-1.9)
P 		272.9
(-3)
P 		272
avr 245
(-3) 		355.6
(1.3) 		400.5
(3) 		313.5
(-0.4) 		320
(-0.1) 		305.3
(-0.7) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 72.8
(3)
P 		38.1
(-0.2)
P 		69.9
(2.7)
P 		8.2
(-3)
A 		65
B 78.2
(3)
P 		48.7
(0.2)
P 		59
(1.2)
P 		14.3
(-3)
A 		64
C 63.3
(1.3)
P 		48.7
(0.2)
P 		86.4
(3)
P 		6.7
(-3)
A 		80
avr 71.4
(3) 		45.2
(0.4) 		71.8
(3) 		9.7
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 48.2
(-3)
P 		124.8
(3)
P 		82.5
(-0.3)
P 		87
(0)
P 		98.9
(1)
P 		77.8
(-0.7)
P 		77
B 64.1
(-3)
P 		120.5
(2.5)
P 		67.5
(-2.7)
P 		80.1
(-1.4)
P 		125.2
(3)
P 		120.6
(2.5)
P 		61
C 107.3
(0.6)
P 		108
(0.7)
P 		138.6
(3)
P 		59.4
(-3)
P 		104.9
(0.4)
P 		91.3
(-0.6)
P 		79
avr 73.2
(-3) 		117.8
(3) 		96.2
(0.1) 		75.5
(-2.7) 		109.7
(1.9) 		96.6
(0.1) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185298_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18255
Sequence Type Exemplar sequence
Representative Public ID ZK1193.2 NCBI
Target Description ZK1193.2 /REP_DB=WormBase Gene ID /WP=CE05127 /TR=Q23409 /GB=AAA83291.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075697(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075697 NCBI Caenorhabditis elegans ZK1193.2 (ZK1193.2) mRNA, complete cds. 11/11 None
SNAP00000031647 ENSEMBL cdna:SNAP chromosome:CEL140:X:406490:408077:-1 10/11 None
GENEFINDER00000031657 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:406575:420361:-1 10/11 None
ZK1193.2 ENSEMBL cdna:known chromosome:CEL140:X:406490:416535:-1 gene:ZK1193.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:406489-416535(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1193.2
Entrez Gene 180396 Entrez gene
SwissProt Q23409 EMBL-EBI
WormBase CE05127 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83291 Hypothetical protein ZK1193.2 [Caenorhabditis elegans] ref|NP_508098.1| ZK1193.2 [Caenorhabditis elegans] 0.0
blast CAE63666 Hypothetical protein CBG08168 [Caenorhabditis briggsae] 0.0
blast AAA83292 Hypothetical protein ZK1193.3 [Caenorhabditis elegans] ref|NP_508099.1| ZK1193.3 [Caenorhabditis elegans] 0.0
blast AAA83291 Hypothetical protein ZK1193.2 [Caenorhabditis elegans] ref|NP_508098.1| ZK1193.2 [Caenorhabditis elegans] 1.0E-108
blast CAB01757 Hypothetical protein T25C12.3 [Caenorhabditis elegans] emb|CAA91487.1| Hypothetical protein T25C12.3 [Caenorhabditis elegans] emb|CAB07849.1| Hypothetical protein T25C12.3 [Caenorhabditis elegans] ref|NP_509919.1| T25C12.3 [Caenorhabditis elegans] 2.0E-76
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 4.0
Pfam IPR001304 EMBL-EBI C-type lectin 2.6E-10
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.1E-22
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.1E-22
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.5E-10
Sequence
Target Sequence 
>C. ELEGANS:185298_S_AT
acatgtgacccaagcactgcgatgctcgatgttataattgcctttgactcttcaggcagc
atttcggatgagatgtattatgcaactgtcggtgcagtgaatactattgggaacgcaatt
tctattggacatgaccactctcgcattcttttgggtacatacgatgctatttctcatttt
tctggagatctcaacacactcgacacgtttgaagcttatcagaacaaacttgctgattta
ttcagtttgggatacaccggaatcaacgggaacaacattcaatcggtcatggactacatc
gtcttgcagaacaactccgctccattcagaccagcgcctgtgagaaagtttttaatgttg
ctaagttctcagggatgggacaaagggaatgtttcagagggaaaagagaatggtttctct
gatccagcgcccgcagctaggaatcttcacaagcttggtctggaaacgttcgcaattggt
ctcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATGTGACCCAAGCACTGCGATGC 381 105 3151 Antisense
GTTATAATTGCCTTTGACTCTTCAG 330 447 3181 Antisense
GACTCTTCAGGCAGCATTTCGGATG 18 371 3196 Antisense
TATTGGACATGACCACTCTCGCATT 77 659 3273 Antisense
ACTCTCGCATTCTTTTGGGTACATA 30 101 3287 Antisense
TGGAGATCTCAACACACTCGACACG 690 549 3333 Antisense
ACATCGTCTTGCAGAACAACTCCGC 12 107 3446 Antisense
TCCATTCAGACCAGCGCCTGTGAGA 226 591 3471 Antisense
GAGAATGGTTTCTCTGATCCAGCGC 90 391 3556 Antisense
GGAATCTTCACAAGCTTGGTCTGGA 575 533 3590 Antisense
GGAAACGTTCGCAATTGGTCTCGGA 481 527 3612 Antisense
Sequence Source Affymetrix Proprietary Database