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[185297_at]

Description B0207.10 /REP_DB=WormBase Gene ID /WP=CE07688 /TR=O01433 /GB=AAB52463.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 31      6grp_total > 20      4grp_total > 02      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 655
1 2 3 4 range
A 88.8
(-2.7)
A 		112.8
(-2.4)
A 		60.9
(-3)
A 		622.3
(3)
P 		561
B 91.5
(-2.8)
A 		72.9
(-3)
A 		91.9
(-2.7)
A 		526.7
(3)
P 		454
C 125.7
(-2.8)
A 		104.3
(-3)
A 		113.7
(-2.9)
A 		715.8
(3)
P 		612
avr 102
(-2.9) 		96.7
(-2.9) 		88.8
(-3) 		621.6
(3) 		533

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 174.8
(-0.7)
P 		138.7
(-1.5)
A 		354.6
(3)
P 		169.9
(-0.8)
P 		64.3
(-3)
A 		77.7
(-2.7)
A 		290
B 86.9
(-3)
A 		276.1
(2)
P 		312.9
(3)
P 		119.1
(-2.1)
P 		179.1
(-0.6)
P 		129.6
(-1.9)
M 		226
C 85.1
(-2.7)
A 		249.9
(3)
P 		76.4
(-3)
A 		178.4
(0.5)
P 		94
(-2.4)
A 		156.7
(-0.2)
P 		174
avr 115.6
(-2.9) 		221.6
(1.8) 		248
(3) 		155.8
(-1.1) 		112.5
(-3) 		121.3
(-2.6) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 32.3
(-1.7)
A 		24.5
(-2.3)
A 		15.9
(-3)
A 		91.1
(3)
P 		75
B 29.2
(-2.3)
A 		18
(-3)
A 		21.3
(-2.8)
A 		112.2
(3)
P 		94
C 41.6
(-2.2)
A 		30
(-3)
A 		39.6
(-2.4)
A 		120.7
(3)
P 		91
avr 34.4
(-2.3) 		24.2
(-3) 		25.6
(-2.9) 		108
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 32.2
(-1.6)
P 		49.3
(0.1)
A 		77.2
(3)
P 		43.1
(-0.5)
P 		19.4
(-2.9)
A 		18.9
(-3)
A 		58
B 30.2
(-3)
A 		91.9
(3)
P 		76
(1.5)
P 		31.6
(-2.9)
P 		72.8
(1.1)
P 		48.3
(-1.2)
M 		62
C 31.5
(-1.7)
A 		76.2
(3)
P 		19.4
(-3)
A 		35.9
(-1.3)
P 		30.4
(-1.8)
A 		52.5
(0.5)
P 		57
avr 31.3
(-3) 		72.5
(3) 		57.5
(0.8) 		36.9
(-2.2) 		40.9
(-1.6) 		39.9
(-1.7) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185297_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1612
Sequence Type Exemplar sequence
Representative Public ID B0207.10 NCBI
Target Description B0207.10 /REP_DB=WormBase Gene ID /WP=CE07688 /TR=O01433 /GB=AAB52463.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059319(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059319 NCBI Caenorhabditis elegans B0207.10 (B0207.10) mRNA, complete cds. 11/11 None
SNAP00000009177 ENSEMBL cdna:SNAP chromosome:CEL140:I:5967161:5967655:-1 9/11 None
B0207.10 ENSEMBL cdna:known chromosome:CEL140:I:5967161:5967827:-1 gene:B0207.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009181 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5967160-5967827(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0207.10
Entrez Gene 181839 Entrez gene
SwissProt O01433 EMBL-EBI
WormBase CE07688 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52463 Hypothetical protein B0207.10 [Caenorhabditis elegans] ref|NP_491720.1| B0207.10 [Caenorhabditis elegans] 2.0E-48
blast AAB52463 Hypothetical protein B0207.10 [Caenorhabditis elegans] ref|NP_491720.1| B0207.10 [Caenorhabditis elegans] 1.0E-38
blast CAE60430 Hypothetical protein CBG04037 [Caenorhabditis briggsae] 6.0E-32
blast CAE60430 Hypothetical protein CBG04037 [Caenorhabditis briggsae] 2.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491720.1 1 70-92
B0207.10 1 70-92
SNAP00000009177 1 53-75
Sequence
Target Sequence 
>C. ELEGANS:185297_AT
gctcaacaagctcaaaatacatttttcagaatggcaacagaaaagtcaatgagcagctcg
gaggaaaatcagtttattggaaatgtcggcacactgaagcacaataaagaagaactacgt
ctaaatttgtcaaatgacagtgacgaagactcattcaacaatcgaaacacgattcgccgt
gcaaagttgatgaacagttcacattttgtttgcatcgtaatgactgcaactcttctcgtc
actgtttgtggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCAACAAGCTCAAAATACATTTT 257 301 16 Antisense
CAGAAAAGTCAATGAGCAGCTCGGA 159 205 53 Antisense
GTTTATTGGAAATGTCGGCACACTG 279 449 87 Antisense
ATGTCGGCACACTGAAGCACAATAA 390 49 98 Antisense
GAACTACGTCTAAATTTGTCAAATG 544 347 127 Antisense
GACAGTGACGAAGACTCATTCAACA 414 367 151 Antisense
CAATCGAAACACGATTCGCCGTGCA 703 181 174 Antisense
GATTCGCCGTGCAAAGTTGATGAAC 548 433 186 Antisense
GTTCACATTTTGTTTGCATCGTAAT 443 445 212 Antisense
TCGTAATGACTGCAACTCTTCTCGT 313 603 230 Antisense
ACTCTTCTCGTCACTGTTTGTGGAA 105 101 244 Antisense
Sequence Source Affymetrix Proprietary Database