[Home] | [Total List]

[185296_at]

Description C24H12.6 /REP_DB=WormBase Gene ID /WP=CE08360 /TR=O17158 /GB=AAB71202.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 37      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 19
(-0.2)
A 		33.4
(3)
A 		6.7
(-3)
A 		8.2
(-2.7)
A 		27
B 25.5
(-2.2)
A 		31.9
(0.6)
A 		37.3
(3)
A 		23.8
(-3)
A 		14
C 25.6
(1.5)
A 		2.6
(-3)
A 		7.4
(-2.1)
A 		33.5
(3)
A 		31
avr 23.4
(3) 		22.6
(2.2) 		17.1
(-3) 		21.8
(1.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 8.8
(-1.9)
A 		1.5
(-3)
A 		14.8
(-1.1)
A 		42.9
(3)
A 		39.1
(2.4)
A 		30.9
(1.3)
A 		41
B 42.4
(3)
A 		18.4
(-1.1)
A 		12.2
(-2.2)
A 		18.4
(-1.1)
A 		32.6
(1.3)
A 		7.5
(-3)
A 		35
C 2.7
(-3)
A 		22.1
(1.8)
A 		21.5
(1.7)
A 		12.5
(-0.6)
A 		13.7
(-0.3)
A 		26.8
(3)
M 		24
avr 18
(-1.3) 		14
(-3) 		16.2
(-2.1) 		24.6
(1.4) 		28.5
(3) 		21.7
(0.2) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 6.9
(2.6)
A 		7.3
(3)
A 		1.7
(-2.5)
A 		1.2
(-3)
A 		6
B 8.1
(2.1)
A 		7.9
(1.8)
A 		8.6
(3)
A 		5.1
(-3)
A 		4
C 8.5
(3)
A 		0.8
(-3)
A 		2.6
(-1.6)
A 		5.7
(0.8)
A 		8
avr 7.8
(3) 		5.3
(-0.9) 		4.3
(-2.5) 		4
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.6
(-2.4)
A 		0.5
(-3)
A 		3.2
(-1.6)
A 		10.9
(2.5)
A 		11.8
(3)
A 		7.5
(0.7)
A 		11
B 14.8
(3)
A 		6.1
(-1.4)
A 		3
(-2.9)
A 		4.9
(-2)
A 		13.2
(2.2)
A 		2.8
(-3)
A 		12
C 1
(-3)
A 		6.7
(1.3)
A 		5.5
(0.4)
A 		2.5
(-1.9)
A 		4.4
(-0.5)
A 		9
(3)
M 		8
avr 5.8
(-1.1) 		4.4
(-2.5) 		3.9
(-3) 		6.1
(-0.8) 		9.8
(3) 		6.4
(-0.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185296_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5686
Sequence Type Exemplar sequence
Representative Public ID C24H12.6 NCBI
Target Description C24H12.6 /REP_DB=WormBase Gene ID /WP=CE08360 /TR=O17158 /GB=AAB71202.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061328(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061328 NCBI Caenorhabditis elegans C24H12.6 (C24H12.6) mRNA, complete cds. 9/11 None
SNAP00000023827 ENSEMBL cdna:SNAP chromosome:CEL140:II:417348:418908:-1 9/11 None
GENEFINDER00000023836 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:417348:420567:-1 9/11 None
C24H12.6 ENSEMBL cdna:known chromosome:CEL140:II:417348:418881:-1 gene:C24H12.6 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:417347-418908(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24H12.6
Entrez Gene 182868 Entrez gene
SwissProt O17158 EMBL-EBI
WormBase CE34706 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71202 Hypothetical protein C24H12.6 [Caenorhabditis elegans] ref|NP_493729.2| C24H12.6 [Caenorhabditis elegans] 1.0E-114
blast AAB71202 Hypothetical protein C24H12.6 [Caenorhabditis elegans] ref|NP_493729.2| C24H12.6 [Caenorhabditis elegans] 1.0E-95
blast AAB71202 Hypothetical protein C24H12.6 [Caenorhabditis elegans] ref|NP_493729.2| C24H12.6 [Caenorhabditis elegans] 5.0E-79
blast AAB71203 Hypothetical protein C24H12.7 [Caenorhabditis elegans] ref|NP_493730.1| C24H12.7 [Caenorhabditis elegans] 1.0E-52
blast AAB71207 Hypothetical protein C24H12.11 [Caenorhabditis elegans] ref|NP_493734.1| C24H12.11 [Caenorhabditis elegans] 5.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000023827 2 4-26,38-57
GENEFINDER00000023836 3 4-26,293-315,325-347
Sequence
Target Sequence 
>C. ELEGANS:185296_AT
atatcttgcgaacttcggtcccattttaaactttgccaaagataagacacccaaaaatga
aagaactgatcctgattatacagagtcacaatcaaatgaacattcattttcagacgtaac
tgaaagttacaacacgtgggaatggatcgcttttttccttctgataatcgatagatatcg
tagaaaaaataaaaacaacgatttagaaagtaatgttgttgcaactaaagcaaaactaat
tgaagatattaagctgaaaatctcagagctggctacattggaaaacaaattaatttgtgc
tgtgatcttgacaaaggatgctgggtgcctcaacaaccagaaccaatcaacccaatctga
agaactttctataacaactgccgattcgcagattaatgctctttcaattagatcagatca
aaattactggaacagtgacattcgtggatcagtacttggatatctgaatgaacaagcggc
tctcgatgtgttgacacgcaacccagttactacacagcctcttccaccatcgtccaccgt
catcgctccagcccgttcttcaactcaacatgtgccaacaacggatacccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCTTGCGAACTTCGGTCCCATT 279 19 174 Antisense
GATCGCTTTTTTCCTTCTGATAATC 193 417 318 Antisense
AAATCTCAGAGCTGGCTACATTGGA 530 115 431 Antisense
GATGCTGGGTGCCTCAACAACCAGA 321 413 490 Antisense
GAACTTTCTATAACAACTGCCGATT 453 349 535 Antisense
GCCGATTCGCAGATTAATGCTCTTT 315 283 553 Antisense
GTGACATTCGTGGATCAGTACTTGG 45 483 608 Antisense
AGCGGCTCTCGATGTGTTGACACGC 24 81 648 Antisense
TGTTGACACGCAACCCAGTTACTAC 417 563 662 Antisense
CCGTTCTTCAACTCAACATGTGCCA 613 263 726 Antisense
AACATGTGCCAACAACGGATACCCC 77 137 740 Antisense
Sequence Source Affymetrix Proprietary Database