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[185294_s_at]

Description F42E11.2A /REP_DB=WormBase Gene ID /WP=CE03309 /TR=Q20332 /GB=CAA91464.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 08      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 86      6grp_total > 18      4grp_total > 55      6grp_highest_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 518
1 2 3 4 range
A 1058.8
(3)
P 		664.9
(-3)
P 		720.3
(-2.2)
P 		699
(-2.5)
P 		394
B 1070.7
(3)
P 		745.3
(-2)
P 		724.7
(-2.3)
P 		680.7
(-3)
P 		390
C 1097.9
(3)
P 		580
(-3)
P 		893.4
(0.6)
P 		758.3
(-0.9)
P 		518
avr 1075.8
(3) 		663.4
(-3) 		779.5
(-1.3) 		712.7
(-2.3) 		412

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 322
1 2 3 4 5 6 range
A 1046.7
(1.4)
P 		1081.2
(3)
P 		955.6
(-2.7)
P 		1009.9
(-0.2)
P 		1006.7
(-0.4)
P 		948.6
(-3)
P 		133
B 1187.4
(3)
P 		913
(-2.1)
P 		865.6
(-3)
P 		1067.3
(0.8)
P 		1040.3
(0.3)
P 		1028.8
(0)
P 		322
C 1093.3
(3)
P 		974.5
(-1.3)
P 		1017.6
(0.2)
P 		928.8
(-3)
P 		962.7
(-1.8)
P 		970.1
(-1.5)
P 		165
avr 1109.1
(3) 		989.6
(-1.4) 		946.3
(-3) 		1002
(-0.9) 		1003.2
(-0.9) 		982.5
(-1.7) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 283
1 2 3 4 range
A 385.5
(3)
P 		144.3
(-2.1)
P 		188.3
(-1.2)
P 		102.3
(-3)
P 		283
B 341.4
(3)
P 		184.1
(-1.8)
P 		167.9
(-2.3)
P 		145.1
(-3)
P 		196
C 363.4
(3)
P 		166.7
(-2)
P 		311.4
(1.7)
P 		127.9
(-3)
P 		236
avr 363.4
(3) 		165
(-2) 		222.5
(-0.5) 		125.1
(-3) 		238

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 192.9
(-3)
P 		384.5
(3)
P 		208.1
(-2.5)
P 		256.1
(-1)
P 		303.8
(0.5)
P 		231
(-1.8)
P 		192
B 413.1
(2.7)
P 		303.9
(-0.4)
P 		210.2
(-3)
P 		282.7
(-1)
P 		422.7
(3)
P 		383.7
(1.9)
P 		213
C 405.2
(3)
P 		297.4
(0)
P 		259
(-1)
P 		186.8
(-3)
P 		311.5
(0.4)
P 		324.8
(0.8)
P 		218
avr 337.1
(2.6) 		328.6
(2.1) 		225.8
(-3) 		241.9
(-2.2) 		346
(3) 		313.2
(1.4) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185294_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16419
Sequence Type Exemplar sequence
Representative Public ID F42E11.2A NCBI
Target Description F42E11.2A /REP_DB=WormBase Gene ID /WP=CE03309 /TR=Q20332 /GB=CAA91464.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077502(11), NM_171973(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077502 NCBI Caenorhabditis elegans F42E11.2a (F42E11.2) mRNA, complete cds. 11/11 A 
NM_171973 NCBI Caenorhabditis elegans F42E11.2c (F42E11.2) mRNA, complete cds. 10/11 A 
GENEFINDER00000010147 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11368682:11373947:1 10/11 None
F42E11.2c ENSEMBL cdna:known chromosome:CEL140:X:11368643:11374239:1 gene:F42E11.2 10/11 A 
F42E11.2a ENSEMBL cdna:known chromosome:CEL140:X:11368682:11374254:1 gene:F42E11.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010140 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181328 3 2 NM_077502 185294_s_at (11)
NM_171973 185294_s_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11368681-11373947(+) 100.0 100.0
Public Domain and Genome References
Ensembl F42E11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91464 Hypothetical protein F42E11.2a [Caenorhabditis elegans] ref|NP_509903.1| F42E11.2a [Caenorhabditis elegans] 0.0
blast CAE70650 Hypothetical protein CBG17353 [Caenorhabditis briggsae] 0.0
blast CAD44123 Hypothetical protein F42E11.2c [Caenorhabditis elegans] ref|NP_741904.1| F42E11.2c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006990 EMBL-EBI Tweety 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509903.1 5 40-62,83-105,217-239,246-268,394-416
NP_741904.1 5 40-62,83-105,217-239,246-268,394-416
F42E11.2c 5 40-62,83-105,217-239,246-268,394-416
F42E11.2a 5 40-62,83-105,217-239,246-268,394-416
GENEFINDER00000010147 5 40-62,83-105,217-239,246-268,394-416
Sequence
Target Sequence 
>C. ELEGANS:185294_S_AT
ggcattactaaacaacattcccgcaaacaagtctcagctggatcgtttgatggaagttgc
tttcaatagcagtgcagcgattgtcaattcatcttcagcagttggggacgatattacgaa
gatgttgaagcttgccggagcagtttcatcttcatcatcgtgctatgttttccatgacga
tgttgtcaatttctactatggaacctgcaatcaatcagtagcaggaatgagcatatatat
gctgagtattctacttcttggtgtcttcttgttcatcttgctcatcgttgtttcgaaaac
atggaacctcttctcgagacttcccaacgaatatactgaagttgacgaagacgatccatt
ctttccacgaggcgtgaacgactctacgattcctgtagacatttacggtactcatgtcta
taatccaagaactagagatcgaacggaaccatcaacaaacacaacatctggaacagcaga
tgaaccaaatgcgcctctttggagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATTACTAAACAACATTCCCGCA 37 535 969 Antisense
CATTCCCGCAAACAAGTCTCAGCTG 283 217 984 Antisense
GAAGCTTGCCGGAGCAGTTTCATCT 621 341 1095 Antisense
TCATCATCGTGCTATGTTTTCCATG 273 621 1120 Antisense
GAGTATTCTACTTCTTGGTGTCTTC 675 397 1212 Antisense
TCATCTTGCTCATCGTTGTTTCGAA 320 621 1241 Antisense
AAACATGGAACCTCTTCTCGAGACT 512 127 1265 Antisense
GACGAAGACGATCCATTCTTTCCAC 120 379 1312 Antisense
CGTGAACGACTCTACGATTCCTGTA 328 245 1341 Antisense
TACGGTACTCATGTCTATAATCCAA 404 645 1372 Antisense
GAACCAAATGCGCCTCTTTGGAGTC 471 345 1450 Antisense
Sequence Source Affymetrix Proprietary Database