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[185293_at]

Description Y11D7A.13 /REP_DB=WormBase Gene ID /WP=CE21359 /TR=Q9XWQ6 /GB=CAA21592.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 27      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 20.3
(-3)
A 		57.8
(-1)
A 		25.1
(-2.7)
A 		130.5
(3)
A 		110
B 35.4
(0.4)
A 		54.2
(3)
A 		11.8
(-2.8)
A 		10.1
(-3)
A 		44
C 43.5
(1)
A 		52.2
(3)
A 		26.1
(-3)
A 		34
(-1.2)
A 		26
avr 33.1
(-1) 		54.7
(2.4) 		21
(-3) 		58.2
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 5.9
(-3)
A 		27.6
(-2.2)
A 		48.5
(-1.5)
P 		39.6
(-1.8)
A 		80.7
(-0.4)
P 		176.1
(3)
P 		170
B 53.4
(-2)
A 		33.4
(-3)
A 		37.2
(-2.8)
A 		47.8
(-2.3)
A 		77.7
(-0.8)
P 		153.9
(3)
P 		121
C 31.7
(-2.6)
A 		60.2
(-1.7)
M 		49.1
(-2.1)
A 		17.7
(-3)
A 		87.4
(-0.9)
P 		216.3
(3)
P 		199
avr 30.3
(-3) 		40.4
(-2.6) 		44.9
(-2.4) 		35
(-2.8) 		81.9
(-1) 		182.1
(3) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 7.4
(-2.6)
A 		12.5
(-0.2)
A 		6.6
(-3)
A 		19.1
(3)
A 		13
B 11.3
(1.9)
A 		13.4
(3)
A 		2.7
(-2.7)
A 		2.2
(-3)
A 		11
C 14.4
(2.6)
A 		15
(3)
A 		9.1
(-0.8)
A 		5.7
(-3)
A 		9
avr 11
(0.9) 		13.6
(3) 		6.1
(-3) 		9
(-0.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 1.1
(-3)
A 		9.8
(-1.8)
A 		10.6
(-1.6)
P 		10
(-1.7)
A 		24.4
(0.3)
P 		42.9
(3)
P 		42
B 18.6
(-1.8)
A 		11.1
(-2.7)
A 		9
(-3)
A 		12.7
(-2.5)
A 		31.6
(-0.2)
P 		57.4
(3)
P 		48
C 11.7
(-2.3)
A 		18.4
(-1.7)
M 		12.5
(-2.2)
A 		3.6
(-3)
A 		28.3
(-0.8)
P 		72.4
(3)
P 		69
avr 10.5
(-2.8) 		13.1
(-2.5) 		10.7
(-2.8) 		8.8
(-3) 		28.1
(-0.6) 		57.6
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185293_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9553
Sequence Type Exemplar sequence
Representative Public ID Y11D7A.13 NCBI
Target Description Y11D7A.13 /REP_DB=WormBase Gene ID /WP=CE21359 /TR=Q9XWQ6 /GB=CAA21592.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069218(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069218 NCBI Caenorhabditis elegans Y11D7A.13 (Y11D7A.13) mRNA, complete cds. 10/11 None
SNAP00000011212 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9270074:9271595:1 10/11 None
GENEFINDER00000011229 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9270074:9271595:1 10/11 None
Y11D7A.13 ENSEMBL cdna:known chromosome:CEL140:IV:9270074:9271595:1 gene:Y11D7A.13 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9270079-9271606(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y11D7A.13
Entrez Gene 189435 Entrez gene
SwissProt Q9XWQ6 EMBL-EBI
WormBase CE35649 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21592 Hypothetical protein Y11D7A.13 [Caenorhabditis elegans] ref|NP_501619.2| Y11D7A.13 [Caenorhabditis elegans] 0.0
blast CAE69047 Hypothetical protein CBG15055 [Caenorhabditis briggsae] 1.0E-99
blast AAA21156 Hypothetical protein C26E6.2 [Caenorhabditis elegans] ref|NP_498049.2| C26E6.2 [Caenorhabditis elegans] 4.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR007588 EMBL-EBI FLYWCH Zn-finger 6.1E-26
Sequence
Target Sequence 
>C. ELEGANS:185293_AT
catcacttctcactccaaaatctgatttggaagatgaaactctttctacaaaaactgaac
aaaagaatgcttcaacaatgaatattcttctaagtatgacaaataattgcgatggacgta
aaccaatcacacttcgacttcctgatctttttaacaagatctcagaaatggaaatacacg
atatggagatgacgttgacaaagtttttgttggagaacagagaattgagaactgatttga
ttagcagaaatggagatcttccagtattctttccaaatgcacacaatgatgaactagttc
tctttgtggctgatcaacatgaaaatgattcagtatttcaaatgattcgagtttctgaaa
ggaatgaggtaagtaaaacagtgaaccttcgatttgaacagtacagaaatcggaattttt
cagaaatcaattcgtcaagcaattcaagaacaccttcaaaaagtatccaatcgttcacta
atgatgaatatttcatccaaaatcaatgttcccctatcacagcaaatgatcgatcaatgg
agaaccgaggaatttattcgattagattcctcaaaaccaaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCACTTCTCACTCCAAAATCTGA 351 213 710 Antisense
CGTAAACCAATCACACTTCGACTTC 241 245 826 Antisense
CTTCGACTTCCTGATCTTTTTAACA 99 219 841 Antisense
GGAGATCTTCCAGTATTCTTTCCAA 629 517 961 Antisense
GTATTCTTTCCAAATGCACACAATG 212 453 973 Antisense
GAACTAGTTCTCTTTGTGGCTGATC 607 349 1000 Antisense
GTGAACCTTCGATTTGAACAGTACA 146 481 1090 Antisense
GTATCCAATCGTTCACTAATGATGA 510 455 1172 Antisense
ATCCAAAATCAATGTTCCCCTATCA 702 37 1204 Antisense
AATGTTCCCCTATCACAGCAAATGA 415 163 1214 Antisense
GATTAGATTCCTCAAAACCAAACTT 502 429 1269 Antisense
Sequence Source Affymetrix Proprietary Database