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[185292_at]

Description Y53F4B.23 /REP_DB=WormBase Gene ID /WP=CE25401 /TR=Q9NA97 /GB=CAB70111.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 52      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 71
(2.2)
P 		75.6
(2.7)
A 		79.2
(3)
A 		13.7
(-3)
A 		66
B 97.2
(3)
P 		66.8
(0.9)
A 		45.7
(-0.6)
A 		10.4
(-3)
A 		87
C 64.9
(2.1)
A 		74.8
(3)
A 		47
(0.5)
A 		8.8
(-3)
A 		66
avr 77.7
(3) 		72.4
(2.5) 		57.3
(1.2) 		11
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 103.3
(-0.2)
A 		186.9
(2.6)
P 		198.1
(3)
P 		91.5
(-0.6)
A 		75.9
(-1.2)
A 		22.4
(-3)
A 		176
B 35
(-2.7)
A 		133.1
(2)
P 		155
(3)
P 		141.9
(2.4)
A 		96.1
(0.2)
P 		29.1
(-3)
A 		126
C 59.6
(-2.2)
A 		156.2
(3)
P 		141.4
(2.2)
M 		95.8
(-0.3)
M 		49.6
(-2.8)
A 		45.4
(-3)
A 		111
avr 66
(-1.5) 		158.7
(2.7) 		164.8
(3) 		109.7
(0.5) 		73.9
(-1.1) 		32.3
(-3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 25.9
(3)
P 		16.4
(0.6)
A 		20.7
(1.7)
A 		2
(-3)
A 		24
B 31
(3)
P 		16.5
(-0)
A 		10.6
(-1.3)
A 		2.2
(-3)
A 		29
C 21.5
(3)
A 		21.5
(3)
A 		16.4
(1.5)
A 		1.5
(-3)
A 		20
avr 26.1
(3) 		18.1
(1) 		15.9
(0.5) 		1.9
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 19
(-1.7)
A 		66.5
(3)
P 		43.1
(0.7)
P 		23.2
(-1.3)
A 		22.9
(-1.3)
A 		5.5
(-3)
A 		61
B 12.2
(-2.7)
A 		44.3
(3)
P 		37.6
(1.8)
P 		37.6
(1.8)
A 		39
(2.1)
P 		10.8
(-3)
A 		34
C 22.1
(-1.7)
A 		47.7
(3)
P 		36
(0.8)
M 		19.3
(-2.2)
M 		16.1
(-2.8)
A 		15.2
(-3)
A 		33
avr 17.8
(-2) 		52.8
(3) 		38.9
(1) 		26.7
(-0.7) 		26
(-0.8) 		10.5
(-3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185292_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3379
Sequence Type Exemplar sequence
Representative Public ID Y53F4B.23 NCBI
Target Description Y53F4B.23 /REP_DB=WormBase Gene ID /WP=CE25401 /TR=Q9NA97 /GB=CAB70111.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064708(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064708 NCBI Caenorhabditis elegans Y53F4B.23 (Y53F4B.23) mRNA, complete cds. 11/11 None
SNAP00000043057 ENSEMBL cdna:SNAP chromosome:CEL140:II:15123249:15125999:1 11/11 None
GENEFINDER00000043133 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15125132:15126152:1 11/11 None
Y53F4B.23 ENSEMBL cdna:known chromosome:CEL140:II:15125552:15126147:1 gene:Y53F4B.23 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15125548-15126149(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53F4B.23
Entrez Gene 190220 Entrez gene
SwissProt Q9NA97 EMBL-EBI
WormBase CE35676 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB70111 Hypothetical protein Y53F4B.23 [Caenorhabditis elegans] ref|NP_497109.2| Y53F4B.23 [Caenorhabditis elegans] 1.0E-92
blast CAB70111 Hypothetical protein Y53F4B.23 [Caenorhabditis elegans] ref|NP_497109.2| Y53F4B.23 [Caenorhabditis elegans] 1.0E-52
blast CAB70111 Hypothetical protein Y53F4B.23 [Caenorhabditis elegans] ref|NP_497109.2| Y53F4B.23 [Caenorhabditis elegans] 2.0E-52
blast CAE59714 Hypothetical protein CBG03146 [Caenorhabditis briggsae] 1.0E-20
blast CAE59714 Hypothetical protein CBG03146 [Caenorhabditis briggsae] 5.0E-19
Sequence
Target Sequence 
>C. ELEGANS:185292_AT
gctgctgctgagctggtgttcaaagagcaaagttcactgaattctggggctgacagaatt
gagggacctccaagaaagctcccgttcggcacagagcatgcagctgagaaggcttctgag
catactggtgctccatccgctgagccaaccttctcagacctccaaaaaacacaattggaa
gacatcaaaaatgacgaaaatgctctagcactgaaaagtagtatggtaggcaagggaact
gaagagtccgatgctccatttgctcatggagttaatgatggggagacctccaaggttctg
gc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGCTGCTGAGCTGGTGTTCAAAG 213 297 16 Antisense
AGTTCACTGAATTCTGGGGCTGACA 521 63 46 Antisense
GAGGGACCTCCAAGAAAGCTCCCGT 10 403 76 Antisense
GAGCATGCAGCTGAGAAGGCTTCTG 286 389 109 Antisense
AGAAGGCTTCTGAGCATACTGGTGC 425 75 122 Antisense
TCTGAGCATACTGGTGCTCCATCCG 596 605 130 Antisense
CCTTCTCAGACCTCCAAAAAACACA 68 269 164 Antisense
AAAATGACGAAAATGCTCTAGCACT 217 133 203 Antisense
TAGGCAAGGGAACTGAAGAGTCCGA 618 649 242 Antisense
TCCGATGCTCCATTTGCTCATGGAG 162 595 262 Antisense
ATGGGGAGACCTCCAAGGTTCTGGC 331 49 293 Antisense
Sequence Source Affymetrix Proprietary Database