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[185291_at]

Description F46F5.15 /REP_DB=WormBase Gene ID /WP=CE19431 /TR=Q9TXX2 /GB=AAC78194.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 03      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 3.6
(-3)
A 		4.7
(-2.9)
A 		9.4
(-2.4)
A 		60
(3)
P 		56
B 20.1
(-1)
A 		3.2
(-3)
A 		12.4
(-1.9)
A 		53.3
(3)
P 		50
C 34.1
(-1.1)
A 		30
(-1.6)
A 		18.6
(-3)
A 		66.6
(3)
P 		48
avr 19.3
(-2.2) 		12.6
(-3) 		13.5
(-2.9) 		60
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 2.3
(-3)
A 		14.7
(-1.9)
A 		18.7
(-1.5)
A 		68.4
(3)
P 		37.4
(0.2)
A 		28.8
(-0.6)
A 		66
B 16.6
(-1.5)
A 		22.4
(-0.9)
A 		56.5
(3)
A 		48.7
(2.1)
M 		32.5
(0.3)
M 		3.5
(-3)
A 		53
C 15.2
(-2.4)
A 		10.9
(-3)
A 		31.5
(-0.2)
A 		55.8
(3)
P 		20.2
(-1.8)
A 		31.3
(-0.3)
A 		45
avr 11.4
(-3) 		16
(-2.4) 		35.6
(0.1) 		57.6
(3) 		30
(-0.6) 		21.2
(-1.7) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.3
(-2.8)
A 		1
(-3)
A 		2.5
(-1.8)
A 		8.8
(3)
P 		8
B 6.4
(0.2)
A 		0.8
(-3)
A 		2.9
(-1.8)
A 		11.3
(3)
P 		11
C 11.3
(3)
A 		8.6
(-0.4)
A 		6.5
(-3)
A 		11.2
(2.9)
P 		5
avr 6.3
(-0.6) 		3.5
(-3) 		4
(-2.6) 		10.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.4
(-3)
A 		5.2
(-1.3)
A 		4.1
(-1.7)
A 		17.3
(3)
P 		11.3
(0.9)
A 		7
(-0.7)
A 		17
B 5.8
(-0.8)
A 		7.5
(0)
A 		13.7
(3)
A 		12.9
(2.6)
M 		13.2
(2.8)
M 		1.3
(-3)
A 		12
C 5.6
(-1.3)
A 		3.3
(-3)
A 		8
(0.6)
A 		11.2
(3)
P 		6.5
(-0.6)
A 		10.5
(2.5)
A 		8
avr 3.9
(-3) 		5.3
(-2.2) 		8.6
(-0.2) 		13.8
(3) 		10.3
(0.9) 		6.3
(-1.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185291_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4896
Sequence Type Exemplar sequence
Representative Public ID F46F5.15 NCBI
Target Description F46F5.15 /REP_DB=WormBase Gene ID /WP=CE19431 /TR=Q9TXX2 /GB=AAC78194.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061409(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061409 NCBI Caenorhabditis elegans F46F5.15 (F46F5.15) mRNA, complete cds. 11/11 None
SNAP00000029512 ENSEMBL cdna:SNAP chromosome:CEL140:II:788503:789181:1 10/11 None
GENEFINDER00000029534 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:786739:789181:1 10/11 None
F46F5.15 ENSEMBL cdna:known chromosome:CEL140:II:788445:789181:1 gene:F46F5.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:788444-789181(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46F5.15
Entrez Gene 185868 Entrez gene
SwissProt Q9TXX2 EMBL-EBI
WormBase CE19431 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78194 Hypothetical protein F46F5.15 [Caenorhabditis elegans] ref|NP_493810.1| F46F5.15 [Caenorhabditis elegans] 1.0E-99
blast AAC78194 Hypothetical protein F46F5.15 [Caenorhabditis elegans] ref|NP_493810.1| F46F5.15 [Caenorhabditis elegans] 2.0E-92
blast AAC78194 Hypothetical protein F46F5.15 [Caenorhabditis elegans] ref|NP_493810.1| F46F5.15 [Caenorhabditis elegans] 9.0E-92
blast AAC78193 Hypothetical protein F46F5.16 [Caenorhabditis elegans] ref|NP_493809.1| F46F5.16 [Caenorhabditis elegans] 1.0E-83
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029534 3 10-27,52-69,215-234
Sequence
Target Sequence 
>C. ELEGANS:185291_AT
cacatctacatagtgctcttgggattattttttgtttcggtagaagcatcttatgaagtg
tcggaaacagagaaaaatgatttgttgatgagatataatcacctccgcgaagacgtcgca
aaggcactttttatatctaacatgcatgaattgacgttcgatcgaatgcttattgatcgt
gtgtcgattatgagttgtcacgaatatgaaaactatatcagtgagatccccgaagacatg
gaattattgcaaagcaaactgcaaggcgtgacgttgacaattccagttgatggatatgga
gttgtactgaatctgtataacgcgtatccacctcaaacgaaacttggatgcattcatagt
aaatgtaaaggttcttttcagtgtattttgggcccagaagaaaagttgtcaagctctggt
tttgtcgaaggaatgccagcatcaaactgtacagcttcaactgggctgatgtgcaagcca
tcagttactgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACATCTACATAGTGCTCTTGGGAT 562 195 16 Antisense
ATATAATCACCTCCGCGAAGACGTC 504 19 108 Antisense
GCGAAGACGTCGCAAAGGCACTTTT 461 287 122 Antisense
TATCAGTGAGATCCCCGAAGACATG 123 653 231 Antisense
GCAAACTGCAAGGCGTGACGTTGAC 190 317 269 Antisense
GAATCTGTATAACGCGTATCCACCT 518 329 324 Antisense
CTTTTCAGTGTATTTTGGGCCCAGA 551 221 389 Antisense
GTTGTCAAGCTCTGGTTTTGTCGAA 378 437 420 Antisense
GCCAGCATCAAACTGTACAGCTTCA 348 279 450 Antisense
AGCTTCAACTGGGCTGATGTGCAAG 216 79 468 Antisense
GATGTGCAAGCCATCAGTTACTGCA 31 409 483 Antisense
Sequence Source Affymetrix Proprietary Database