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[185290_at]

Description Y47H10A.3 /REP_DB=WormBase Gene ID /WP=CE24376 /TR=Q9U2B6 /GB=CAB60385.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 06      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 29.6
(-2)
A 		62.7
(2)
A 		71.1
(3)
A 		20.9
(-3)
A 		50
B 43.9
(-0.7)
A 		8.1
(-3)
A 		34.7
(-1.3)
A 		100.4
(3)
A 		92
C 53.2
(3)
A 		18.1
(-2.3)
A 		13.4
(-3)
A 		44.6
(1.7)
A 		40
avr 42.2
(-0.1) 		29.6
(-3) 		39.7
(-0.6) 		55.3
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 61
(-2.1)
A 		48.6
(-2.8)
A 		44.9
(-3)
A 		153.2
(3)
A 		148.7
(2.8)
A 		139.5
(2.2)
A 		108
B 14.9
(-3)
A 		36.6
(-2.1)
A 		90.9
(0.2)
A 		158.2
(3)
M 		132.4
(1.9)
A 		114.9
(1.2)
A 		143
C 64.1
(-1.2)
A 		10.2
(-3)
A 		83.7
(-0.6)
A 		191.7
(3)
A 		153.1
(1.7)
A 		143.3
(1.4)
A 		182
avr 46.7
(-2.3) 		31.8
(-3) 		73.2
(-1.2) 		167.7
(3) 		144.7
(2) 		132.6
(1.5) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 10.8
(-0)
A 		13.6
(1.1)
A 		18.6
(3)
A 		3.1
(-3)
A 		16
B 14
(0.7)
A 		2
(-3)
A 		8
(-1.1)
A 		21.4
(3)
A 		19
C 17.6
(3)
A 		5.2
(-2.8)
A 		4.7
(-3)
A 		7.5
(-1.7)
A 		13
avr 14.1
(3) 		6.9
(-3) 		10.4
(-0.1) 		10.7
(0.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 11.2
(-2.8)
A 		17.3
(-1.7)
A 		9.8
(-3)
A 		38.9
(2)
A 		44.9
(3)
A 		34
(1.1)
A 		35
B 5.2
(-3)
A 		12.2
(-2.1)
A 		22.1
(-0.9)
A 		41.9
(1.5)
M 		53.8
(3)
A 		42.8
(1.6)
A 		49
C 23.8
(-0.3)
A 		3.1
(-3)
A 		21.3
(-0.6)
A 		38.6
(1.6)
A 		49.5
(3)
A 		48
(2.8)
A 		46
avr 13.4
(-2.6) 		10.9
(-3) 		17.7
(-1.9) 		39.8
(1.5) 		49.4
(3) 		41.6
(1.8) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185290_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1798
Sequence Type Exemplar sequence
Representative Public ID Y47H10A.3 NCBI
Target Description Y47H10A.3 /REP_DB=WormBase Gene ID /WP=CE24376 /TR=Q9U2B6 /GB=CAB60385.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060653
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000005131 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12096283:12098091:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060653 8/11 Cross Hyb Matching Probes None
SNAP00000005127 8/11 Cross Hyb Matching Probes None
Y47H10A.3 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12096213-12098022(-) 89.33 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60385 Hypothetical protein Y47H10A.3 [Caenorhabditis elegans] ref|NP_493054.2| Y47H10A.3 [Caenorhabditis elegans] 0.0
blast CAB60387 Hypothetical protein Y47H10A.5 [Caenorhabditis elegans] ref|NP_493056.1| Y47H10A.5 [Caenorhabditis elegans] 2.0E-97
blast CAB60386 Hypothetical protein Y47H10A.4 [Caenorhabditis elegans] ref|NP_493055.1| Y47H10A.4 [Caenorhabditis elegans] 4.0E-96
Sequence
Target Sequence 
>C. ELEGANS:185290_AT
gaaaaccgtcaacactatgagctgaaggtgttcagtggggggctcaacgagtacttttgg
aagaagcggagtttacaaacttactggcaggccttttttggaaatgttcccgttttgata
attggctcgagaacaggcttgtacgagcgagacccaaaaactatgccgccgaacagttgg
ccaccattctccgtttattacgtaagggcttctattcgggcgccgaaaagcctgccgcgc
ctgcctacctcggcctgccccacgctgcgccgtctgcatagtgcggcgcggaaccttaaa
gtgtcggccgctgcaaaagaaccacgggcagacgtacaaaaactgaaacgtgacagaatc
ccatcaactgctgcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACCGTCAACACTATGAGCTGA 234 355 547 Antisense
GTTCAGTGGGGGGCTCAACGAGTAC 410 443 576 Antisense
GTTTACAAACTTACTGGCAGGCCTT 424 449 617 Antisense
TGGCAGGCCTTTTTTGGAAATGTTC 412 543 631 Antisense
ATGTTCCCGTTTTGATAATTGGCTC 441 31 650 Antisense
GAACAGGCTTGTACGAGCGAGACCC 634 349 677 Antisense
GCGAGACCCAAAAACTATGCCGCCG 620 289 693 Antisense
TACGTAAGGGCTTCTATTCGGGCGC 217 625 745 Antisense
GCTGCGCCGTCTGCATAGTGCGGCG 480 297 810 Antisense
GGCCGCTGCAAAAGAACCACGGGCA 390 543 852 Antisense
ACAGAATCCCATCAACTGCTGCAGT 143 109 899 Antisense
Sequence Source Affymetrix Proprietary Database