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[185289_at]

Description C24D10.5 /REP_DB=WormBase Gene ID /WP=CE16877 /TR=O44132 /GB=AAB88316.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 05      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 49
(-0.9)
A 		9.1
(-3)
A 		50.5
(-0.8)
A 		122.2
(3)
A 		113
B 23
(-1.3)
A 		12.2
(-2.3)
A 		5.6
(-3)
A 		66.5
(3)
A 		61
C 39.2
(0.6)
A 		5.8
(-3)
A 		9.4
(-2.6)
A 		61.9
(3)
A 		56
avr 37.1
(-0.7) 		9
(-3) 		21.8
(-2) 		83.5
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 12
(-3)
A 		15.6
(-2.7)
A 		60.6
(1.1)
A 		66.7
(1.6)
A 		16.3
(-2.6)
A 		83.8
(3)
A 		72
B 9.4
(-2.8)
A 		8.7
(-2.9)
A 		7.2
(-3)
A 		26.7
(-1.3)
A 		76.8
(3)
A 		60.3
(1.6)
A 		70
C 5.9
(-3)
A 		86.8
(3)
A 		8
(-2.8)
A 		43.3
(-0.2)
A 		53
(0.5)
A 		70.3
(1.8)
A 		81
avr 9.1
(-3) 		37
(-0.3) 		25.3
(-1.4) 		45.6
(0.5) 		48.7
(0.8) 		71.5
(3) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17.8
(3)
A 		2
(-3)
A 		13.2
(1.2)
A 		17.9
(3)
A 		16
B 7.3
(-0.2)
A 		3
(-2.2)
A 		1.3
(-3)
A 		14.2
(3)
A 		13
C 13
(3)
A 		1.7
(-3)
A 		3.3
(-2.2)
A 		10.4
(1.6)
A 		11
avr 12.7
(2.3) 		2.2
(-3) 		5.9
(-1.2) 		14.2
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 2.2
(-3)
A 		5.6
(-1.9)
A 		13.2
(0.6)
A 		16.9
(1.8)
A 		4.9
(-2.1)
A 		20.4
(3)
A 		18
B 3.3
(-2.7)
A 		2.9
(-2.8)
A 		1.8
(-3)
A 		7.1
(-1.9)
A 		31.2
(3)
A 		22.5
(1.2)
A 		29
C 2.2
(-3)
A 		26.5
(3)
A 		2
(-3)
A 		8.7
(-1.4)
A 		17.1
(0.7)
A 		23.5
(2.3)
A 		25
avr 2.6
(-3) 		11.7
(-0.2) 		5.7
(-2) 		10.9
(-0.4) 		17.7
(1.6) 		22.1
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185289_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10644
Sequence Type Exemplar sequence
Representative Public ID C24D10.5 NCBI
Target Description C24D10.5 /REP_DB=WormBase Gene ID /WP=CE16877 /TR=O44132 /GB=AAB88316.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068326(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068326 NCBI Caenorhabditis elegans C24D10.5 (C24D10.5) mRNA, complete cds. 11/11 None
SNAP00000024203 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5150249:5151022:1 11/11 None
GENEFINDER00000024216 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5150249:5151022:1 11/11 None
C24D10.5 ENSEMBL cdna:known chromosome:CEL140:IV:5150249:5151022:1 gene:C24D10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5150254-5151028(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24D10.5
Entrez Gene 182846 Entrez gene
SwissProt O44132 EMBL-EBI
WormBase CE16877 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB88316 Hypothetical protein C24D10.5 [Caenorhabditis elegans] ref|NP_500727.1| C24D10.5 [Caenorhabditis elegans] 1.0E-120
blast NP_500818 T11F8.1 [Caenorhabditis elegans] gb|AAB88555.1| Hypothetical protein T11F8.1 [Caenorhabditis elegans] 2.0E-45
blast NP_500817 T11F8.2 [Caenorhabditis elegans] gb|AAB88556.2| Hypothetical protein T11F8.2 [Caenorhabditis elegans] 1.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500727.1 5 10-29,41-60,85-104,109-131,151-173
C24D10.5 5 10-29,41-60,85-104,109-131,151-173
SNAP00000024203 5 10-29,41-60,85-104,109-131,151-173
GENEFINDER00000024216 5 10-29,41-60,85-104,109-131,151-173
Sequence
Target Sequence 
>C. ELEGANS:185289_AT
gtctcaattcttatcagtggctcacttattgcaattaccaaatcatacagatggggcaac
gattcggagtatgaaagtggacatttgggaaatttcaagcaaaactatagaattggatct
tatggaattgctatgttcagtttttctggaatgtcatacttttgtagctaccaaagatat
ccaatttcggctttattttcattctttgtgttcaatgcgacatccgccatgatctatttt
gtgttcgtttgggagttacaaccattgtgtcgtggaatgaaatacaagaaaggatggaaa
gatgctcttgttctgtgtagtccggtactgggcgcccttgtcatatcattcatcatatca
atttgcattgtgcatttttgcgaaatgcggaaagtatggtttgctgctctctattacgtt
ccacaaatgttcctcaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCAATTCTTATCAGTGGCTCAC 514 469 154 Antisense
CAGTGGCTCACTTATTGCAATTACC 197 207 168 Antisense
GGAATGTCATACTTTTGTAGCTACC 515 531 301 Antisense
GATATCCAATTTCGGCTTTATTTTC 460 425 329 Antisense
CTTTGTGTTCAATGCGACATCCGCC 254 223 357 Antisense
GACATCCGCCATGATCTATTTTGTG 455 369 372 Antisense
GGGAGTTACAACCATTGTGTCGTGG 579 495 404 Antisense
AAGATGCTCTTGTTCTGTGTAGTCC 175 155 452 Antisense
CGCCCTTGTCATATCATTCATCATA 245 257 486 Antisense
TATGGTTTGCTGCTCTCTATTACGT 493 653 548 Antisense
TACGTTCCACAAATGTTCCTCAATC 187 649 568 Antisense
Sequence Source Affymetrix Proprietary Database