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[185288_at]

Description T08E11.7 /REP_DB=WormBase Gene ID /WP=CE19574 /TR=O76638 /GB=AAC26313.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 23      6grp_total > 13      4grp_total > 05      6grp_high1_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 123.6
(0.6)
P 		56.1
(-3)
A 		79.3
(-1.8)
A 		168.9
(3)
P 		113
B 103.1
(-1)
P 		58.7
(-3)
A 		59.5
(-3)
A 		189.6
(3)
P 		131
C 143.1
(0.3)
P 		50.7
(-3)
A 		66.6
(-2.4)
P 		218
(3)
P 		167
avr 123.3
(-0) 		55.2
(-3) 		68.5
(-2.4) 		192.2
(3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 101.6
(0.6)
P 		102.8
(0.7)
P 		142.3
(3)
P 		141.4
(2.9)
P 		49.4
(-2.5)
P 		40.1
(-3)
A 		102
B 116.8
(1.6)
P 		142.8
(3)
P 		90.4
(0.2)
P 		105.2
(1)
P 		92.7
(0.4)
P 		29
(-3)
A 		114
C 110.6
(0.5)
P 		152.8
(3)
P 		94.8
(-0.4)
P 		128.4
(1.6)
P 		50.7
(-3)
A 		63.5
(-2.2)
P 		102
avr 109.7
(1.4) 		132.8
(3) 		109.2
(1.4) 		125
(2.5) 		64.3
(-1.6) 		44.2
(-3) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 45
(3)
P 		12.2
(-3)
A 		20.7
(-1.4)
A 		24.7
(-0.7)
P 		33
B 32.9
(1.3)
P 		14.5
(-2.8)
A 		13.8
(-3)
A 		40.4
(3)
P 		27
C 47.4
(3)
P 		14.6
(-3)
A 		23.2
(-1.4)
P 		36.8
(1.1)
P 		33
avr 41.8
(3) 		13.8
(-3) 		19.2
(-1.8) 		34
(1.3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 18.7
(-1)
P 		36.6
(3)
P 		31
(1.7)
P 		35.9
(2.8)
P 		14.9
(-1.9)
P 		9.8
(-3)
A 		27
B 40.6
(1.9)
P 		47.5
(3)
P 		21.9
(-1.2)
P 		27.9
(-0.2)
P 		37.7
(1.4)
P 		10.8
(-3)
A 		37
C 41
(1.9)
P 		46.6
(3)
P 		24.1
(-1.5)
P 		25.8
(-1.1)
P 		16.4
(-3)
A 		21.3
(-2)
P 		30
avr 33.4
(0.9) 		43.6
(3) 		25.7
(-0.6) 		29.9
(0.2) 		23
(-1.2) 		14
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185288_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4792
Sequence Type Exemplar sequence
Representative Public ID T08E11.7 NCBI
Target Description T08E11.7 /REP_DB=WormBase Gene ID /WP=CE19574 /TR=O76638 /GB=AAC26313.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061683(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061683 NCBI Caenorhabditis elegans T08E11.7 (T08E11.7) mRNA, complete cds. 11/11 None
SNAP00000018367 ENSEMBL cdna:SNAP chromosome:CEL140:II:1817284:1819969:-1 10/11 None
GENEFINDER00000018378 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1817284:1819969:-1 10/11 None
T08E11.7 ENSEMBL cdna:known chromosome:CEL140:II:1818650:1820005:-1 gene:T08E11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1818648-1820004(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08E11.7
Entrez Gene 188289 Entrez gene
SwissProt O76638 EMBL-EBI
WormBase CE19574 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26314 Hypothetical protein T08E11.6 [Caenorhabditis elegans] ref|NP_494083.1| T08E11.6 [Caenorhabditis elegans] 0.0
blast AAC26313 Hypothetical protein T08E11.7 [Caenorhabditis elegans] ref|NP_494084.1| T08E11.7 [Caenorhabditis elegans] 1.0E-159
blast AAC26313 Hypothetical protein T08E11.7 [Caenorhabditis elegans] ref|NP_494084.1| T08E11.7 [Caenorhabditis elegans] 1.0E-132
blast AAC26313 Hypothetical protein T08E11.7 [Caenorhabditis elegans] ref|NP_494084.1| T08E11.7 [Caenorhabditis elegans] 1.0E-129
blast AAB66215 Hypothetical protein F45C12.5 [Caenorhabditis elegans] ref|NP_494058.1| F45C12.5 [Caenorhabditis elegans] 1.0E-122
blast AAB66215 Hypothetical protein F45C12.5 [Caenorhabditis elegans] ref|NP_494058.1| F45C12.5 [Caenorhabditis elegans] 1.0E-109
blast CAB07669 Hypothetical protein T13F3.5 [Caenorhabditis elegans] ref|NP_507106.1| T13F3.5 [Caenorhabditis elegans] 6.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.5E-50
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.0E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.3E-4
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.5E-50
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.5E-11
Sequence
Target Sequence 
>C. ELEGANS:185288_AT
gaattctatctcaactttggaacttttcatgcctgagcatgttccacttcttctggaagt
cttgagaaaagctggacctgtgcacacggagcatatcaaattaagtcgtttttcaatcga
agaagctcattcaattctcccgtatttcaatgctcaaaagctcgaaaaaattgaaatttt
cttggctcaatcatcggagggattcgatcgaatcagggatttggagcaatggaaaaactt
gaaaagctttaccttttacagcattgctgctccattaggaaaggagcaaattgagcacat
gttccgatttgagaactttaatattgcagttgataagtttttagtgcaagatgctattcg
gatacgagatgatctccttcacagaagtgcattccaaagttgtattatcagttttcgaga
ttcgaattcaacgccgaaagaaatcgcaaaagtgttcaattctgatgaggaagaggattt
tttgtggacaaacgatagtcatacgttccgaattactatttttgatgaagttttttcttg
ttccattcgtacatttgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCTATCTCAACTTTGGAACTT 69 325 291 Antisense
TTTGGAACTTTTCATGCCTGAGCAT 592 665 306 Antisense
GTTCCACTTCTTCTGGAAGTCTTGA 348 441 331 Antisense
GAGAAAAGCTGGACCTGTGCACACG 652 391 354 Antisense
GGACCTGTGCACACGGAGCATATCA 280 523 364 Antisense
ATTCTCCCGTATTTCAATGCTCAAA 639 9 424 Antisense
GAAATTTTCTTGGCTCAATCATCGG 175 363 463 Antisense
GCTTTACCTTTTACAGCATTGCTGC 227 305 536 Antisense
ATTGAGCACATGTTCCGATTTGAGA 673 5 580 Antisense
ACGAGATGATCTCCTTCACAGAAGT 619 93 654 Antisense
TTCTTGTTCCATTCGTACATTTGAC 285 689 825 Antisense
Sequence Source Affymetrix Proprietary Database