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[185286_at]

Description C03G6.13 /REP_DB=WormBase Gene ID /WP=CE07887 /TR=O01452 /GB=AAB52313.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 25      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 33.8
(-1.9)
A 		76.5
(3)
A 		53.3
(0.4)
A 		23.7
(-3)
A 		53
B 36.5
(-3)
A 		66.9
(1.3)
A 		76.9
(2.7)
A 		79.2
(3)
A 		43
C 16.5
(-2.6)
A 		23
(-2.3)
A 		9.9
(-3)
A 		120.1
(3)
A 		110
avr 28.9
(-3) 		55.5
(0.5) 		46.7
(-0.6) 		74.3
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 115.5
(0.8)
M 		177.5
(3)
P 		84.2
(-0.3)
A 		7.5
(-3)
A 		10.3
(-2.9)
A 		35.5
(-2)
A 		170
B 179.4
(3)
P 		146.4
(1.9)
P 		80.3
(-0.4)
A 		5.7
(-3)
A 		16.3
(-2.6)
A 		37.3
(-1.9)
A 		174
C 228.2
(3)
P 		163.4
(1.1)
P 		73.6
(-1.6)
A 		27.7
(-3)
A 		43.3
(-2.5)
A 		38.5
(-2.7)
A 		201
avr 174.4
(3) 		162.4
(2.6) 		79.4
(-0.5) 		13.6
(-3) 		23.3
(-2.6) 		37.1
(-2.1) 		161
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 12.3
(1)
A 		16.6
(3)
A 		13.9
(1.8)
A 		3.5
(-3)
A 		13
B 11.6
(-3)
A 		16.5
(1.7)
A 		17.8
(3)
A 		16.9
(2.1)
A 		6
C 5.5
(-2.3)
A 		6.6
(-1.9)
A 		3.4
(-3)
A 		20.2
(3)
A 		17
avr 9.8
(-3) 		13.2
(2.5) 		11.7
(0.1) 		13.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 21.3
(-1.1)
M 		63.1
(3)
P 		18.3
(-1.4)
A 		1.9
(-3)
A 		3.1
(-2.9)
A 		8.7
(-2.3)
A 		61
B 62.4
(3)
P 		48.7
(1.7)
P 		19.5
(-1.2)
A 		1.5
(-3)
A 		6.6
(-2.5)
A 		13.9
(-1.8)
A 		61
C 84.6
(3)
P 		49.9
(0.4)
P 		18.7
(-2)
A 		5.6
(-3)
A 		14
(-2.4)
A 		12.9
(-2.4)
A 		79
avr 56.1
(3) 		53.9
(2.8) 		18.8
(-1.2) 		3
(-3) 		7.9
(-2.4) 		11.8
(-2) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185286_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11538
Sequence Type Exemplar sequence
Representative Public ID C03G6.13 NCBI
Target Description C03G6.13 /REP_DB=WormBase Gene ID /WP=CE07887 /TR=O01452 /GB=AAB52313.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072476(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072476 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-293) (tag-293) mRNA, complete cds. 11/11 None
SNAP00000031552 ENSEMBL cdna:SNAP chromosome:CEL140:V:7357201:7358273:-1 11/11 None
GENEFINDER00000031571 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7357201:7359377:-1 11/11 None
C03G6.13 ENSEMBL cdna:known chromosome:CEL140:V:7357201:7359377:-1 gene:C03G6.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7357201-7359378(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-293
Ensembl C03G6.13
Entrez Gene 182175 Entrez gene
SwissProt O01452 EMBL-EBI
WormBase CE07887 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52313 Temporarily assigned gene name protein 293 [Caenorhabditis elegans] ref|NP_504877.1| Temporarily Assigned Gene name family member (tag-293) [Caenorhabditis elegans] 0.0
blast AAB52313 Temporarily assigned gene name protein 293 [Caenorhabditis elegans] ref|NP_504877.1| Temporarily Assigned Gene name family member (tag-293) [Caenorhabditis elegans] 1.0E-154
blast CAE58298 Hypothetical protein CBG01406 [Caenorhabditis briggsae] 1.0E-134
blast CAE58296 Hypothetical protein CBG01404 [Caenorhabditis briggsae] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.9
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 7.2E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.4E-16
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 7.2E-14
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.9
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 7.2E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.4E-16
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 7.2E-14
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.9
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 7.2E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.4E-16
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 7.2E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504877.1 2 13-35,55-77
C03G6.13 2 13-35,55-77
GENEFINDER00000031571 2 13-35,55-77
Sequence
Target Sequence 
>C. ELEGANS:185286_AT
tgttctaatgctgtttccgatgcctcgtgtactgcgctttatccaacagaagacgaacaa
gggtatccagctgctggaaacaatgctggaagaccacttgcatgcttcaccaccgcagct
gaaactccagctccagttgatggcgatatgaagaaggctgcactgactaattgtgcaaag
acttgtggattctgctgtaatacagatgactacagttgtccaaatgctcaattcccacgt
ctcaactgcgacacaatcaccaacaatcaatgtaaggatccaaactggagaacaatcatt
gccacggattgcccatcagcgtgtggattctgtaaccaaggaggatgtgttgatgcagtt
gttgattgtgctaatgatcgttcaatctgtcaaagcgtcggaatgcaggagtttgtgaat
cagaactgtcaaagaacctgtggaagatgtggatcatcaactggaaatccatctgttcca
ggaggagggtcgtgcacaaattatcaagctgattctagcaccgcctgtgcagcttgggcc
ggaaatgggttctgcaccaatacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCTAATGCTGTTTCCGATGCCT 465 561 550 Antisense
TCGTGTACTGCGCTTTATCCAACAG 672 603 574 Antisense
GACGAACAAGGGTATCCAGCTGCTG 15 379 601 Antisense
TGGAAGACCACTTGCATGCTTCACC 415 547 636 Antisense
ACAATCATTGCCACGGATTGCCCAT 214 115 841 Antisense
GATTGCCCATCAGCGTGTGGATTCT 164 435 856 Antisense
GATCGTTCAATCTGTCAAAGCGTCG 1 419 925 Antisense
GTTCCAGGAGGAGGGTCGTGCACAA 155 441 1024 Antisense
TATCAAGCTGATTCTAGCACCGCCT 214 659 1051 Antisense
CCTGTGCAGCTTGGGCCGGAAATGG 322 265 1073 Antisense
CGGAAATGGGTTCTGCACCAATACC 437 239 1089 Antisense
Sequence Source Affymetrix Proprietary Database