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[185285_at]

Description Y39B6B.CC /REP_DB=WormBase Gene ID /WP=CE21674 /TR=Q9NET1 /GB=CAB60934.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 39      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 110
(3)
A 		10.2
(-3)
A 		9.5
(-3)
A 		11.2
(-2.9)
A 		101
B 85.4
(3)
A 		14.6
(-2.4)
A 		13
(-2.6)
A 		7.2
(-3)
A 		78
C 91.7
(3)
A 		13.8
(-2.6)
A 		7.9
(-3)
A 		72.2
(1.6)
A 		84
avr 95.7
(3) 		12.9
(-2.8) 		10.1
(-3) 		30.2
(-1.6) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 15
(3)
A 		7.3
(-2.9)
A 		7.2
(-3)
A 		8.6
(-1.9)
A 		7.5
(-2.8)
A 		8.7
(-1.8)
A 		8
B 61.1
(3)
A 		10.2
(-2.2)
A 		8.3
(-2.4)
A 		23.5
(-0.9)
A 		2.9
(-3)
A 		16.4
(-1.6)
A 		58
C 13.9
(-2.8)
A 		12.1
(-3)
A 		66.6
(3)
A 		47.5
(0.9)
A 		42.7
(0.4)
A 		23.1
(-1.8)
A 		55
avr 30
(3) 		9.9
(-3) 		27.4
(2.2) 		26.5
(2) 		17.7
(-0.7) 		16.1
(-1.1) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 40.1
(3)
A 		2.2
(-2.9)
A 		2.5
(-2.9)
A 		1.6
(-3)
A 		39
B 27.2
(3)
A 		3.6
(-2.5)
A 		3
(-2.6)
A 		1.5
(-3)
A 		26
C 30.4
(3)
A 		4
(-2.7)
A 		2.8
(-3)
A 		12.2
(-1)
A 		28
avr 32.6
(3) 		3.3
(-2.9) 		2.8
(-3) 		5.1
(-2.5) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.8
(3)
A 		2.6
(2)
A 		1.6
(-3)
A 		2.2
(0)
A 		2.3
(0.5)
A 		2.1
(-0.5)
A 		1
B 21.3
(3)
A 		3.4
(-2.3)
A 		2
(-2.8)
A 		6.2
(-1.5)
A 		1.2
(-3)
A 		6.1
(-1.5)
A 		20
C 5.2
(-2.3)
A 		3.7
(-3)
A 		16.9
(3)
A 		9.6
(-0.3)
A 		13.8
(1.6)
A 		7.7
(-1.2)
A 		13
avr 9.8
(3) 		3.2
(-3) 		6.8
(0.3) 		6
(-0.5) 		5.8
(-0.6) 		5.3
(-1.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185285_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19461
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.CC NCBI
Target Description Y39B6B.CC /REP_DB=WormBase Gene ID /WP=CE21674 /TR=Q9NET1 /GB=CAB60934.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171604 NCBI Caenorhabditis elegans Y39B6A.4 (Y39B6A.4) mRNA, complete cds. 11/11 None
GENEFINDER00000030726 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19177379:19177864:1 11/11 None
Y39B6A.4 ENSEMBL cdna:known chromosome:CEL140:V:19177379:19177864:1 gene:Y39B6A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19177378-19177864(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.4
Entrez Gene 189738 Entrez gene
SwissProt Q9NET1 EMBL-EBI
WormBase CE21674 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC51073 Hypothetical protein Y39B6A.4 [Caenorhabditis elegans] ref|NP_741694.1| Y39B6A.4 [Caenorhabditis elegans] 8.0E-51
blast CAE73144 Hypothetical protein CBG20534 [Caenorhabditis briggsae] 3.0E-20
Sequence
Target Sequence 
>C. ELEGANS:185285_AT
tcgataaccgttacgtcatcctcgtcctcctcctccacgtcatcatcagaatctatgcca
cgtcatcacaaaacacgccggcgacgtcacggagactatgaggattcggaaaatgacgat
gatgacgaagattattcggaggacgaaggtgaagccccaccaccacctcccccggcgccg
ccacaaatgaccgacgaggaaaaatcgataatgtggcagaacccggaacatccggaacgt
cgccaaggacggtattccggtggagacgatgaacaaaccgaattcgtgagaactgaatat
accgacatggaatataagaaattaaggacttatagtgagtttttgaaaaggacctggaat
atgcgaaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGATAACCGTTACGTCATCCTCGT 396 603 52 Antisense
ATCAGAATCTATGCCACGTCATCAC 232 29 96 Antisense
CATCACAAAACACGCCGGCGACGTC 653 209 115 Antisense
CGGCGACGTCACGGAGACTATGAGG 506 239 130 Antisense
GCCGCCACAAATGACCGACGAGGAA 640 285 228 Antisense
TAATGTGGCAGAACCCGGAACATCC 182 635 260 Antisense
AACATCCGGAACGTCGCCAAGGACG 153 129 278 Antisense
GTCGCCAAGGACGGTATTCCGGTGG 17 475 290 Antisense
GAACAAACCGAATTCGTGAGAACTG 27 353 322 Antisense
GTGAGAACTGAATATACCGACATGG 229 481 337 Antisense
AAAGGACCTGGAATATGCGAAAATG 585 121 398 Antisense
Sequence Source Affymetrix Proprietary Database