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[185284_at]

Description Y113G7B.6 /REP_DB=WormBase Gene ID /WP=CE23288 /TR=Q9U2X7 /GB=CAB54328.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 2
(-3)
A 		2.3
(-2.9)
A 		17.2
(0.9)
A 		25.3
(3)
A 		23
B 17.6
(3)
A 		12
(1)
A 		1.2
(-3)
A 		2.6
(-2.5)
A 		16
C 5.4
(1.2)
A 		1.3
(-2.5)
A 		0.8
(-3)
A 		7.3
(3)
A 		7
avr 8.3
(-0.1) 		5.2
(-3) 		6.4
(-1.9) 		11.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 4.8
(-1.9)
A 		2
(-3)
A 		18.1
(3)
A 		3.2
(-2.5)
A 		1.9
(-3)
A 		4.1
(-2.2)
A 		16
B 4.7
(-1.7)
A 		0.5
(-3)
A 		19.8
(3)
A 		1.2
(-2.8)
A 		8.4
(-0.5)
A 		3.5
(-2.1)
A 		19
C 5.9
(-1.9)
A 		2.2
(-2.8)
A 		1.1
(-3)
A 		27.8
(3)
A 		1.6
(-2.9)
A 		10.4
(-0.9)
A 		27
avr 5.1
(-1.2) 		1.6
(-3) 		13
(3) 		10.7
(1.8) 		4
(-1.7) 		6
(-0.7) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.7
(-2.7)
A 		0.5
(-3)
A 		4.5
(3)
A 		3.7
(1.8)
A 		4
B 5.6
(3)
A 		3
(0.1)
A 		0.3
(-3)
A 		0.6
(-2.7)
A 		5
C 1.8
(3)
A 		0.4
(-2.6)
A 		0.3
(-3)
A 		1.2
(0.6)
A 		2
avr 2.7
(3) 		1.3
(-3) 		1.7
(-1.3) 		1.8
(-0.9) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.9
(-2.5)
A 		0.7
(-2.8)
A 		3.9
(3)
A 		0.8
(-2.6)
A 		0.6
(-3)
A 		1
(-2.3)
A 		3
B 1.6
(-1.2)
A 		0.2
(-3)
A 		4.8
(3)
A 		0.3
(-2.9)
A 		3.4
(1.2)
A 		1.3
(-1.6)
A 		5
C 2.2
(-0.8)
A 		0.7
(-2.5)
A 		0.3
(-3)
A 		5.6
(3)
A 		0.5
(-2.8)
A 		3.5
(0.6)
A 		5
avr 1.6
(-0.4) 		0.5
(-3) 		3
(3) 		2.2
(1.1) 		1.5
(-0.6) 		1.9
(0.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185284_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12594
Sequence Type Exemplar sequence
Representative Public ID Y113G7B.6 NCBI
Target Description Y113G7B.6 /REP_DB=WormBase Gene ID /WP=CE23288 /TR=Q9U2X7 /GB=CAB54328.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075497(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075497 NCBI Caenorhabditis elegans Y113G7B.6 (Y113G7B.6) mRNA, complete cds. 11/11 None
SNAP00000024710 ENSEMBL cdna:SNAP chromosome:CEL140:V:20201419:20202500:1 11/11 None
GENEFINDER00000024721 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20201419:20206400:1 11/11 None
Y113G7B.6 ENSEMBL cdna:known chromosome:CEL140:V:20201419:20202500:1 gene:Y113G7B.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20201418-20202500(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y113G7B.6
Entrez Gene 190971 Entrez gene
SwissProt Q9U2X7 EMBL-EBI
WormBase CE23288 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54328 Hypothetical protein Y113G7B.6 [Caenorhabditis elegans] ref|NP_507898.1| Y113G7B.6 [Caenorhabditis elegans] 1.0E-149
blast CAB54328 Hypothetical protein Y113G7B.6 [Caenorhabditis elegans] ref|NP_507898.1| Y113G7B.6 [Caenorhabditis elegans] 1.0E-144
blast CAB54331 Hypothetical protein Y113G7B.9 [Caenorhabditis elegans] ref|NP_507900.2| Serpentine Receptor, class BC (class B-like) family member (srbc-34) [Caenorhabditis elegans] 1.0E-133
blast T31752 hypothetical protein C07G3.7 - Caenorhabditis elegans 5.0E-85
blast CAB54329 Hypothetical protein Y113G7B.7 [Caenorhabditis elegans] ref|NP_507897.1| Y113G7B.7 [Caenorhabditis elegans] 2.0E-70
blast CAB54338 Hypothetical protein Y113G7B.3 [Caenorhabditis elegans] ref|NP_507893.1| Y113G7B.3 [Caenorhabditis elegans] 1.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.2E-55
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.7E-10
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 8.8E-116
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024721 6 304-326,346-368,383-405,426-448,476-498,518-540
Sequence
Target Sequence 
>C. ELEGANS:185284_AT
gaaggttccattgattgggattctggatgatttggctgtgattctgaagaatccgaaact
tcgattaaatcttttggaagtatcggcattcgaagagcagagggcaattttgaaggcttt
tggagaaatttccagcatgcttcatactaaacgaataacgctagagggttttgaaccgtg
tgatttcatctctatgctttcgtacttcaaacctggaattctcggggaaattaacattga
gaacttgtccaatttcacagataccactcaagtttgcgacttgtttgagctggaacaatg
gaagcaagcgaaatcgatttcaatcatttcgaagaaacattttaattttccaattgaaca
cctcttccatctctctcgttttcaagtcaactggatgagattgtcggttgatgatgctat
taagatcagagatgttatcatgaaatcctctcattttgaatctggaatgatattggcaga
atatgaaattgagccagaagttgtgagagttttcgatccaaactacaatgaagctggcaa
ttttgatctcgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGTTCCATTGATTGGGATTCTG 431 333 321 Antisense
CTGGATGATTTGGCTGTGATTCTGA 628 239 343 Antisense
ATCGGCATTCGAAGAGCAGAGGGCA 285 35 402 Antisense
GAAATTTCCAGCATGCTTCATACTA 364 363 445 Antisense
GAACCGTGTGATTTCATCTCTATGC 704 345 493 Antisense
GAACTTGTCCAATTTCACAGATACC 355 351 561 Antisense
CAGATACCACTCAAGTTTGCGACTT 607 205 578 Antisense
GTTTGCGACTTGTTTGAGCTGGAAC 31 449 592 Antisense
TTAATTTTCCAATTGAACACCTCTT 309 683 662 Antisense
GAAATCCTCTCATTTTGAATCTGGA 133 363 762 Antisense
GAAGCTGGCAATTTTGATCTCGTCA 446 343 850 Antisense
Sequence Source Affymetrix Proprietary Database