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[185283_at]

Description C40A11.3 /REP_DB=WormBase Gene ID /WP=CE19366 /TR=Q9TZA9 /GB=AAC68765.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 20      6grp_total > 66      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 34.1
(-2.2)
P 		59.7
(2.3)
A 		29.2
(-3)
P 		64
(3)
P 		35
B 36.5
(-1.9)
P 		31.1
(-3)
A 		59.4
(3)
A 		31.3
(-3)
A 		28
C 45.1
(-1.4)
P 		48.4
(-1.1)
P 		30.6
(-3)
A 		86.3
(3)
P 		56
avr 38.6
(-3) 		46.4
(-0.9) 		39.7
(-2.7) 		60.5
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 43.5
(0.2)
M 		42.3
(-0.3)
P 		51.9
(3)
A 		35.7
(-2.5)
A 		34.2
(-3)
P 		51.6
(2.9)
A 		18
B 28.1
(-2.1)
A 		25.4
(-2.4)
A 		46.9
(0.2)
A 		26.4
(-2.3)
A 		20.2
(-3)
P 		70.3
(3)
P 		50
C 8.6
(-3)
A 		45.2
(2.8)
A 		23.6
(-0.6)
A 		46.2
(3)
A 		40.4
(2.1)
A 		35.2
(1.2)
P 		38
avr 26.7
(-3) 		37.6
(-0.5) 		40.8
(0.3) 		36.1
(-0.8) 		31.6
(-1.9) 		52.4
(3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 12.4
(2.3)
P 		13
(3)
A 		7.6
(-3)
P 		9.4
(-1)
P 		5
B 11.7
(1.2)
P 		7.7
(-2.2)
A 		13.8
(3)
A 		6.7
(-3)
A 		7
C 14.9
(3)
P 		13.9
(1.6)
P 		10.7
(-3)
A 		14.6
(2.6)
P 		4
avr 13
(3) 		11.5
(-0.2) 		10.7
(-1.9) 		10.2
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 8
(-3)
M 		15
(3)
P 		11.3
(-0.2)
A 		9.1
(-2.1)
A 		10.3
(-1)
P 		12.6
(0.9)
A 		7
B 9.8
(-2.1)
A 		8.5
(-2.5)
A 		11.4
(-1.6)
A 		7
(-3)
A 		8.2
(-2.6)
P 		26.2
(3)
P 		19
C 3.2
(-3)
A 		13.8
(3)
A 		6
(-1.4)
A 		9.3
(0.5)
A 		13.1
(2.6)
A 		11.8
(1.9)
P 		11
avr 7
(-3) 		12.4
(0.3) 		9.6
(-1.4) 		8.5
(-2.1) 		10.5
(-0.9) 		16.9
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185283_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5560
Sequence Type Exemplar sequence
Representative Public ID C40A11.3 NCBI
Target Description C40A11.3 /REP_DB=WormBase Gene ID /WP=CE19366 /TR=Q9TZA9 /GB=AAC68765.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061795(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061795 NCBI Caenorhabditis elegans C40A11.3 (C40A11.3) mRNA, complete cds. 11/11 None
C40A11.3 ENSEMBL cdna:known chromosome:CEL140:II:2141131:2143042:1 gene:C40A11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005076 6/11 Cross Hyb Matching Probes None
SNAP00000005077 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005091 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2141129-2143041(+) 98.17 100.0
Public Domain and Genome References
Gene Title
Ensembl C40A11.3
Entrez Gene 183353 Entrez gene
SwissProt Q9TZA9 EMBL-EBI
WormBase CE19366 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68765 Hypothetical protein C40A11.3 [Caenorhabditis elegans] ref|NP_494196.1| C40A11.3 [Caenorhabditis elegans] 1.0E-126
blast AAK72056 Hypothetical protein C17F4.8 [Caenorhabditis elegans] ref|NP_494485.2| C17F4.8 [Caenorhabditis elegans] 2.0E-47
blast T31922 hypothetical protein C17F4.4 - Caenorhabditis elegans 5.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 6.6E-36
Sequence
Target Sequence 
>C. ELEGANS:185283_AT
gtgacattcctctccataaagacgaatccaattgtattttcatcgaccgctcgccgaaac
atttcgacgtaatcctaaactttctgagagatggtgacgtggatcttcctgaactagaga
aagaggtcaaagaagtaaggagagaggcccagttttacctgttggatggtttagtctatt
tgtgtaattggaaattgaacacagcaattcatgtattaaaaaacgacactgagaaattgg
agtttcaaaggaaaaacgacaagccacgacttttgattaagtatggagatataaacgatg
tagttgagtactggagattacgtttcaatataccggaaatcttggaaaaatacggaaata
aattgcacattgcttttcatccatatgaagaattcacagggtttgtagatgagtttcttg
ctgaaattgttgctgattctcgggataatgaagatgatagtgcgaatagtgagggtgatt
ctctaatttctttgaataaacactatatatgctcattgtctgtctttaaacatggaagtt
ttgtcactctaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACATTCCTCTCCATAAAGACGA 11 483 122 Antisense
AGACGAATCCAATTGTATTTTCATC 174 71 141 Antisense
ACCGCTCGCCGAAACATTTCGACGT 416 89 167 Antisense
TCGACGTAATCCTAAACTTTCTGAG 196 599 185 Antisense
GAGGCCCAGTTTTACCTGTTGGATG 191 405 265 Antisense
CTGTTGGATGGTTTAGTCTATTTGT 395 239 280 Antisense
GGAGATTACGTTTCAATATACCGGA 514 517 434 Antisense
AATTGTTGCTGATTCTCGGGATAAT 429 179 546 Antisense
GAGGGTGATTCTCTAATTTCTTTGA 665 401 592 Antisense
ATATATGCTCATTGTCTGTCTTTAA 538 19 626 Antisense
AACATGGAAGTTTTGTCACTCTAGA 589 131 650 Antisense
Sequence Source Affymetrix Proprietary Database